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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagttgggtctgctctgttcactttaaggttctagatccatatttgctttcactggaatagtgctacaaatctgatatatcatgtcgcccttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTTCATCAGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGT

Basic information

species Zea mays
transcript GRMZM2G098815_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098815_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g09610.1 (Oryza sativa), 3'ss of exon 1
taagttgggtctgctctgttcactttaaggttct---agatccatatttgctttcactggaatagtg---ctacaaatctgatatatcatgtcgcccttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTTCATCAGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGT
      | |  |||  ||||    | ||| ||||   || ||   | ||  |||||| |||| | ||    |   | | ||||||||  |||  |  || || |||||||||| |||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||||||  || || | ||||| |||||| ||||  | || |
-----ggaggatgca-tgtttttgtaaagattcttttagttctgaaatttatttcacaggaaaaatgaagttcagactttgatatattttgtttcgttttgactagGACAAGAAGATGCTTCATCCTACTGGTCGGTTGATTGCATTTGCTATTCTTCACCAGAGTTATTCCTCGGAGCCGGCAAACCCATATGTTCCACTTTTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211052432|gb|FL214543.1|FL214543
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|71438169|gb|DR819219.1|DR819219
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|71765717|gb|DR963654.1|DR963654
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|78117671|gb|DV536058.1|DV536058
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|148952745|gb|EC898726.2|EC898726
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|71438316|gb|DR819366.1|DR819366
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052429|gb|FL214540.1|FL214540
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|74245464|gb|DT653378.1|DT653378
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|71433709|gb|DR814759.1|DR814759
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|76926415|gb|DV170849.1|DV170849
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|149082609|gb|EE171808.2|EE171808
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|50336738|gb|CO531864.1|CO531864
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|89253146|gb|DY624932.1|DY624932
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052431|gb|FL214542.1|FL214542
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052434|gb|FL214545.1|FL214545
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|149005336|gb|EE039887.2|EE039887
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACCAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052435|gb|FL214546.1|FL214546
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|91873215|gb|EB403172.1|EB403172
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|149076111|gb|EE164690.2|EE164690
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|14245049|gb|BG873631.1|BG873631
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052430|gb|FL214541.1|FL214541
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211052428|gb|FL214539.1|FL214539
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|78120056|gb|DV538440.1|DV538440
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|211055371|gb|FL214548.1|FL214548
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
EST: gi|148960798|gb|EE011460.2|EE011460
EST:     CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAG                         GACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT
genomic: CCCGCGAGCGCCGCCTCCGTGTCTGCGGCGCCCTCTGCTTCCTCCTCGAGgcaagctacg ... cttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttcactggaatagtgctacaaatctgatatatcatgtcgcccttcgattagGACAAGATGATGCTCCATCCTACTGGCCGGTTAATTGCATTTGCAATTCTTCATCAGAGTTATTCGCCGCAGACAGCAAATCCATATATTCCTATATTGT
                         atctgat  putative branch site (score: 4)
                                        tcgcccttc  putative PPT
                              atatatcat  TA-rich tract