1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggaatctaatggccggatctacgccgtccttgccttaatccttccccgcgacgcccgccatgatcctcctcgcctgacctctcctctctcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG
species | Zea mays |
transcript | GRMZM2G098174_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGG TCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGEST: gi|93012172|gb|EB637692.1|EB637692
genomic: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGGgtgagtctac ... tcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCG
EST: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGG TCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGEST: gi|211180431|gb|FL072957.1|FL072957
genomic: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGGgtgagtctac ... tcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCG
EST: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGG TCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCG
genomic: GGAATCGTTCCCCTCCGGCGACCTTCCTCCCTCCCTCCGTTCCGTTTCGGgtgagtctac ... tcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCG
ccccgcgacgcccgccatgatcctcctcgcctgacctctcctctctcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG
gcctgac putative branch site (score: 81)
tcctcctcgcctgacc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggaatctaatggccggatctacgccgtccttgccttaatccttccccgcgacgcccgccatgatcctcctcgcctgacctctcctctctcgtttccagTCCTTCCACTGTATCACCGGCAAAGCAAAGGATCGGAGGCCACTCCGCCCGGAGGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - tccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatga