Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggctactagtacccactatcactagtcaactcaacgctaaattttggcgatttctttaaccttttttctaataatatataggtgattttctgtggtggtggtgatgtgcgatcgcagGAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACGGGCGGCGGGTGCGTTGCTTCGTGGATTGGTGATCGGAGGTCGCCGGCGG

Basic information

species Zea mays
transcript GRMZM2G098011_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211244569|gb|FL131418.1|FL131418
EST:     GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTA                         GAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG
genomic: GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTAgtacggctac ... gcgatcgcagGAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG
EST: gi|211244564|gb|FL131413.1|FL131413
EST:     GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTA                         GAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG
genomic: GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTAgtacggctac ... gcgatcgcagGAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG
EST: gi|211244571|gb|FL131420.1|FL131420
EST:     GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTA                         GAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG
genomic: GCCCCTCTTCACAGATTCTAATCGAATTTGCCAATCTGCAAGCTAACGTAgtacggctac ... gcgatcgcagGAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctaataatatataggtgattttctgtggtggtggtgatgtgcgatcgcagGAACAATCACCAATCACCATCCTTAAGAAGATGATGCGATGCACTGTAACGGGCGGCGGGTGCGTTGCTTCGTGGATTGGTGATCGGAGGTCGCCGGCGG
   ttctaat  putative branch site (score: 2)
      taataatatataggtg  TA-rich tract