Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211075545|gb|FL228303.1|FL228303EST: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
EST:
gi|211075551|gb|FL228309.1|FL228309EST: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
EST:
gi|91874652|gb|EB404609.1|EB404609EST: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGC CTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
genomic: GCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCgtgagtgccc ... tttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagcagcgtaaagtgccttccggattcaattgattctttaaattgtttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATGTGGCAAGAGTTGAGGCAATTGAAGCAGCAGGATCTCGAGGCACCAATGT
aattgat putative branch site (score: 4)
ttgtttctt putative PPT
attcaattgattcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatggggtatttttgtttatataaggctttctcattgctttgacgaagcagcgtaaagtgccttccggattcaattgattctttaaattgtttcttacagCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATGTGGCAAGAGTTGAGGCAATTGAAGCAGCAGGATCTCGAGGCACCAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC