1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtacacctcatagtgtaggttaatgctgtgtttatggcggagattgttaggtaggcatctctatcattcatattggttcctttcctgtattgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAAAAGGCAGTGGAGGTTCTAGATACACTTGGCAGTAGCATGACAAGTTTAA
species | Zea mays |
transcript | GRMZM2G097502_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAG GTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAAEST: gi|149013699|gb|EE043151.2|EE043151
genomic: GCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAGgtttgaggaa ... attgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
EST: CGCTGTCCCAGAGGGCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAG GTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
genomic: CGCTGTCCCAGAGGGCTGGTGTGGGCAAGGCAAAAGCCGGCGCTGCCAAGgtttgaggaa ... attgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAA
ttgttaggtaggcatctctatcattcatattggttcctttcctgtattgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAAAAGGCAGTGGAGGTTCTAGATACACTTGGCAGTAGCATGACAAGTTTAA
ttcctttcctgtatt CT-rich tract
attcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtacacctcatagtgtaggttaatgctgtgtttatggcggagattgttaggtaggcatctctatcattcatattggttcctttcctgtattgaaacagGTTTCAGAAGTGAGCTCAATTTTAGGTAGAGCTAGCACTGCTGGGCTTGAAAAGGCAGTGGAGGTTCTAGATACACTTGGCAGTAGCATGACAAGTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcat