Sequence
atgc intronic sequence ATGC exonic sequencegtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatcttattgatgctatctatcatgcggatataaaacaagtaacaagatcttccgttaactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G097426_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g26450.1 (Oryza sativa), 3'ss of exon 3
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatg------atcagcatggttccttagtttagtatcttattgatgctatctatcatgcggatataaaacaagtaacaagatcttccgttaactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
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gtaagattcatact------------ctctttgattcagtaatgctaagcac---cagcatggaataatgttattgcttgcacttgcgttatttctcaatttagcatacaggtgattatatctgctatgtgcatgtaaagtaagtagtacaatttcctattgacaaatagGTATTACGAAGGTGGCATCTCTTCTGTGTATATTTGGGAGGATGAAGATGAGAGTTTTATTGCATGCTTCTTAATAAAGAAAG
upper sequence: GRMZM2G097426_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA10G36400.1 (Glycine max), 3'ss of exon 3
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatcttattgatgctatctatc-atgcggatataaaacaagtaacaagatcttccgttaac-tattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
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------------------------------------------------------------------atgatcatgtttgtgttgttcttcttgctgtctatctgaatacaattattgagctattttgttttaaaacaatatgcaccattaatggataatatcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAGCCTGCTTTTTAATAAAGAAAG
upper sequence: GRMZM2G097426_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G31170.1 (Glycine max), 3'ss of exon 3
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatcttattgatgctatctatc-atgcggatataaaacaagtaacaagatcttccgttaac-tattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
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----------------------------------------------------------------atttaactat--tttgtgtgttcgtcttgctgtctatataaattcaattatttagctattttgttttaaaacaatatgcaccattaatggataatgtcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAGCCTGCTTTTTAATAAAGAAAG
upper sequence: GRMZM2G097426_T03 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA03G15910.1 (Glycine max), 3'ss of exon 3
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatc-ttattgatgctatctatcatgcggatataaaacaagtaacaagatcttccgttaac-tattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
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---------------------------------------------------------------------------------------gtctaactgaatacaattattga-gctatttt-------gttttaaaacaatatgcaccattaatggataatatcatagGTATTATGAAGGTGGCATTTCATCAGTTTACATGTGGGAAGATGATAATGAAGGTTTCGTAACCAGCTTTTTAATAAAGAAAG
upper sequence: GRMZM2G097426_T03 (Zea mays), 3'ss of exon 1
lower sequence: Vv18s0001g01970.t01 (Vitis vinifera), 3'ss of exon 3
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatcttattgatgctatctatcatgcggatataaaacaagtaacaagatcttccgttaa-ctattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
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gtgaggtcctt--tac---ttacctcgtacttgagttcattcctttga-taattttgacatgaaaaa------taatct-----attttccagatcctttttgcattcctctcattttcaaaagaagcacaaaattagcatttcaattaaccaataaattggtagGTATTATGAAGGTGGCATTTCATCAGTTTATATGTGGGAGGACGAGAATGAAGGATTTGTGGGCTGCTTCTTAATAAAGAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60400271|gb|DN233078.1|DN233078EST: AGGAATCTTGAGGTTGAGGCAAACGAAGTTTTCTCAGTGTATCGTGACCA GTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
genomic: AGGAATCTTGAGGTTGAGGCAAACGAAGTTTTCTCAGTGTATCGTGACCAgtaagattca ... taactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
EST:
gi|71323051|gb|DR798199.1|DR798199EST: GAAGTTTTCTCAGTGTATCGTGACCA GTACTATGAAGGGGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
genomic: GAAGTTTTCTCAGTGTATCGTGACCAgtaagattca ... taactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
EST:
gi|71445378|gb|DR826428.1|DR826428EST: AGGAATCTTGAGGTTGAGGCAAACGAAGTTTTCTCAGTGTATCGTGACCA GTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
genomic: AGGAATCTTGAGGTTGAGGCAAACGAAGTTTTCTCAGTGTATCGTGACCAgtaagattca ... taactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctatctatcatgcggatataaaacaagtaacaagatcttccgttaactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
tcttccgtt CT-rich tract
atataaaacaagtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattcatattacatgttgctgtctccttaaagtagcagtgctaagtaaatgcaatatgaaagaaggctatgatcagcatggttccttagtttagtatcttattgatgctatctatcatgcggatataaaacaagtaacaagatcttccgttaactattagGTACTATGAAGGTGGCATCTCATCTGTTTACATTTGGGAGGATGAAGATAATGGGTTTATCGCATGCTTCTTAATTAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA