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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacaattgaaaagtcagacttgttcatgaccagttcgttgttctctcctcctcccttcgacgaacgtttgtgaatttgcgttggtgatggaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA

Basic information

species Zea mays
transcript GRMZM2G097421_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097421_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g35570.1 (Oryza sativa), 3'ss of exon 1
----------------------------------------------------------------------------------------------------------gaacaattgaaaagtcagacttgttcatgaccagttcgttgttctctcctcctcccttcgacgaacgtttgtgaatttgcgttggtgatggaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA
                                                                                                          | |   |   |||| |   |   || ||| ||| |  | || |||          |  ||| |  |  |  | | | |  |||  || || | ||  ||||||||||||||||||| |||||||||||||| || |||||| |||| ||| |||| |
gtccgccggccttatatttttcttggttctcctggtttgcagcctttgggcagcgcctctcgcgttcttttggtttcttgggcgttgttatgaggtcatgtggcgaggaatgtcctaaaggcgccccattttatggccaatctggtgctcttcgt------caacgatgcgctgtaatcattgtttgttcatggtgaattt--cagGTGTTGGAGGCTATGGATACCTCTTGGAGCCTCTCTGGTGGGTTGGAATGATTACAA

upper sequence: GRMZM2G097421_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 1
gaacaattgaaaagtcagacttgttcatgaccagttcgttgttctctcctcctcccttcgacgaacgtttgtgaatttgcgttggtgatggaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA
            ||||  | | |   ||  ||| |||            |  |    | | |  |  |   |   ||   |||  || ||   || | |||||||||||| ||||||||||| ||||||||||| |||||||| || ||| |||| |
---------gtgagtctaattgggaaatacccacttcagaaaatctgggttttttactagccctaattgattttgttgttgtttttggtgtt-ttggtagGTGTTGGAGGATATGGGTACCTGTTGGAGCCACTTTGGTGGATGGGCATGATTACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118379|gb|DV536765.1|DV536765
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|101399470|gb|EB821607.1|EB821607
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|149012854|gb|EE042696.2|EE042696
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|94478878|gb|EB707836.1|EB707836
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCCTCTTGGAGCCACTGTGGTGGATTGCGATG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACC-TCTTGGAGCCACTGTGGTGGATTGGGATG
EST: gi|211193189|gb|FK988934.1|FK988934
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCSGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|71305814|gb|DR789035.1|DR789035
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|211193198|gb|FK988943.1|FK988943
EST:     CGTCAAGAAGAAGGGCCTACGCCGAGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|91048854|gb|EB159272.1|EB159272
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|211193195|gb|FK988940.1|FK988940
EST:     CGTCAAGAAAAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|74236901|gb|DT644815.1|DT644815
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|149101364|gb|EE187481.2|EE187481
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|148951157|gb|EC896836.2|EC896836
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|148947645|gb|EC893125.2|EC893125
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|74244190|gb|DT652104.1|DT652104
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|148942011|gb|EC887002.2|EC887002
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|71416856|gb|DR803834.1|DR803834
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|148972078|gb|EE022933.2|EE022933
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|149005298|gb|EE039847.2|EE039847
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|149070089|gb|EE158489.2|EE158489
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|91050129|gb|EB160547.1|EB160547
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|211193191|gb|FK988936.1|FK988936
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGATACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|149013793|gb|EE043260.2|EE043260
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|148948891|gb|EC894305.2|EC894305
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|211193199|gb|FK988944.1|FK988944
EST:     CGTCAAGAAGAAGGGCCTACGCCGAGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|94477226|gb|EB706184.1|EB706184
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|211190794|gb|FK988929.1|FK988929
EST:     CGTCAAGAAGAAGGGCCTACGCCGAGCCGCCACCGCCGGCGCCCGCGCGG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|101394371|gb|EB819120.1|EB819120
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|33285537|gb|CF075332.1|CF075332
EST:     CGTCAAGAAGAAGGGCCTACGCCGAGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|71446398|gb|DR827448.1|DR827448
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|78079716|gb|DV508128.1|DV508128
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|71446399|gb|DR827449.1|DR827449
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|76012865|gb|DT940035.1|DT940035
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
EST: gi|50323304|gb|CO518430.1|CO518430
EST:     CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAG                         GTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG
genomic: CGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 85

GGCGCGCTCCTTGCGGTTGCCTCCTCCGCCTTCATTGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 124

GGCGCGCTCCTTGCGGTTGCCTCCTCCGCCTTCATTGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 153

GGCGCGCTCCTTGCGGTTGCCTCCTCCGCCTTCATTGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 86

GGCGCGCTCCTTGCGGTTGCCTCCTCCGCCTTCATTGGCGTCAGCTTCATCGTCAAGAAGAAGGGCCTACGCCGGGCCGCCACCGCCGGCGCCCGCGCAGgtacacgccc ... gaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcctcccttcgacgaacgtttgtgaatttgcgttggtgatggaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA
                          tgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaacaattgaaaagtcagacttgttcatgaccagttcgttgttctctcctcctcccttcgacgaacgtttgtgaatttgcgttggtgatggaatttgcagGTGTTGGAGGCTATGGGTACCTCTTGGAGCCACTGTGGTGGATTGGGATGGTTACGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
gaacaat
- - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg