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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagcatgtagcttgctagtatggtttcacctcccaatttttgatatcatgactctcaatttccgcttgttccctcaacatcttatgtttctgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGCTTTGGCTTCCTCAAATTTTCTGACCATACCGCCGCTGCTCATATTCTCA

Basic information

species Zea mays
transcript GRMZM2G096814_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50335736|gb|CO530862.1|CO530862
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|33466574|gb|CF243623.1|CF243623
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|71449495|gb|DR830545.1|DR830545
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|89764090|gb|DY691025.1|DY691025
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|71439271|gb|DR820321.1|DR820321
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|211400324|gb|FL375585.1|FL375585
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAS                         -TTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|50333624|gb|CO528750.1|CO528750
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|76933426|gb|DV173446.1|DV173446
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|71330774|gb|DR802176.1|DR802176
EST:     TATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
EST: gi|101391192|gb|EB817530.1|EB817530
EST:     CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAG                         CTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC
genomic: CATGGATGGACGAGGACTACCTCTACGGCTGCTTCACCACCTCGCGCGAGgttcgtcccg ... tgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatgactctcaatttccgcttgttccctcaacatcttatgtttctgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGCTTTGGCTTCCTCAAATTTTCTGACCATACCGCCGCTGCTCATATTCTCA
                                       tgtttct  CT-rich tract
                                    ttatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagcatgtagcttgctagtatggtttcacctcccaatttttgatatcatgactctcaatttccgcttgttccctcaacatcttatgtttctgtgatgcagCTTCTTTCCCTTGTCATCAAACGGAACAAGCAGACTGGCCAATCAGAGGGCTTTGGCTTCCTCAAATTTTCTGACCATACCGCCGCTGCTCATATTCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT