1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtagatttgggcatgctaagagccaaggttgtttcatcttgcaacagattgacatgctctatagctataagtaatgtcaagttatttcatcttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG
species | Zea mays |
transcript | GRMZM2G096647_T08 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCACAGAAAGGAGGACATGCCTTTTTGAGCACGTCTTCAAAATCTTCAA ATCTGATGGCAAAAGTGTGTGTTTEST: gi|14242941|gb|BG840249.2|BG840249
genomic: GGCACAGAA-GGAGGACATGCCTCTT-GAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTT
EST: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAA-TCATCAG ATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTEST: gi|76020732|gb|DT947902.1|DT947902
genomic: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
EST: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAG ATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTEST: gi|50331285|gb|CO526411.1|CO526411
genomic: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
EST: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAG ATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTEST: gi|50338074|gb|CO533200.1|CO533200
genomic: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
EST: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAG ATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTEST: gi|71445259|gb|DR826309.1|DR826309
genomic: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
EST: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAG ATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
genomic: GAGGCACAGAAGGAGGACATGCCTCTTGAGCACGTCTTCAAAATCATCAGgtaacttcca ... cttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCT
agattgacatgctctatagctataagtaatgtcaagttatttcatcttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG
gattgac putative branch site (score: 7)
tttcatctt putative PPT
tataagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatttgggcatgctaagagccaaggttgtttcatcttgcaacagattgacatgctctatagctataagtaatgtcaagttatttcatcttgcaacagATCTGATGGCAAAAGTGTGTGTTTATGGTTCCTGAGTCAGATGATCTTTCTTCAGTTTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG