1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcgagttgtatctttggtatgctgcaattacgtatttgagaacatggaatcatcagccagcttcaacttattatttcttccttaccacatttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACTTGTCAACACTGGATTTGTCTATTTTCAGCGAACGGGAAGTTTCGTGAT
species | Zea mays |
transcript | GRMZM2G096622_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|76292694|gb|DV032262.1|DV032262
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|71443062|gb|DR824112.1|DR824112
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|91876915|gb|EB406872.1|EB406872
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|149105501|gb|EE291026.2|EE291026
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|91051556|gb|EB161974.1|EB161974
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACEST: gi|50335234|gb|CO530360.1|CO530360
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
EST: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCG GGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
genomic: GCAGCTTCCTCGTCGCCCTCGTTGGATCCTTCGTCTCCGAACATGGACCGgtgagctatc ... ttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCAC
ggaatcatcagccagcttcaacttattatttcttccttaccacatttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACTTGTCAACACTGGATTTGTCTATTTTCAGCGAACGGGAAGTTTCGTGAT
tccttac putative branch site (score: 133)
tttcattct putative PPT
ttcaacttattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgagttgtatctttggtatgctgcaattacgtatttgagaacatggaatcatcagccagcttcaacttattatttcttccttaccacatttcattctagGGGTGTAATTAAATCTCCATGGTCTCGAAGAAAAAGGAAACGAGCGCTCACTTGTCAACACTGGATTTGTCTATTTTCAGCGAACGGGAAGTTTCGTGAT
- - - - - - - - - atgctgc
- - - - - - - - - - - - - - - - - - - - - catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcttc