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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctgcccccggttcctcccatgctgcacttgtatctctgttagtgtgatgcggtcagtgagactcgcccagttctggctgcgagttagctgatggaattcgggttctcttgggtttcgtgtcaatttattgttccttgtcaccttgatgactcttccttacttacccatgataatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG

Basic information

species Zea mays
transcript GRMZM2G096585_T05
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211432103|gb|FL195660.1|FL195660
EST:     AAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGT
genomic: AAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGG-TTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGT
EST: gi|211437291|gb|FL195677.1|FL195677
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|148938868|gb|EC883219.2|EC883219
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434699|gb|FL195668.1|FL195668
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|6626419|gb|AW257951.1|AW257951
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGCCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432092|gb|FL195649.1|FL195649
EST:     AAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTTGAAG                         TGCATTACACGGG
genomic: AAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTT-GAAGgtatcctgcc ... aatatttcagTGCATTACACGGG
EST: gi|149088396|gb|EE177498.2|EE177498
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211429498|gb|FL195641.1|FL195641
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACRCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211439890|gb|FL195693.1|FL195693
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|31910479|gb|CD651444.1|CD651444
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437303|gb|FL195689.1|FL195689
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432089|gb|FL195646.1|FL195646
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437295|gb|FL195681.1|FL195681
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211429500|gb|FL195643.1|FL195643
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437302|gb|FL195688.1|FL195688
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432101|gb|FL195658.1|FL195658
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437300|gb|FL195686.1|FL195686
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|148961764|gb|EE012538.2|EE012538
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434705|gb|FL195674.1|FL195674
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211439889|gb|FL195692.1|FL195692
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437297|gb|FL195683.1|FL195683
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTCAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432093|gb|FL195650.1|FL195650
EST:     CAAGGAGGGCGAGGGCTKGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434692|gb|FL195661.1|FL195661
EST:     TAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211429499|gb|FL195642.1|FL195642
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATCACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434701|gb|FL195670.1|FL195670
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432094|gb|FL195651.1|FL195651
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|9952051|gb|BE638634.1|BE638634
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|148986243|gb|EE029994.2|EE029994
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434706|gb|FL195675.1|FL195675
EST:     TAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432102|gb|FL195659.1|FL195659
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|149111770|gb|EE190920.2|EE190920
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|149071261|gb|EE159656.2|EE159656
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434704|gb|FL195673.1|FL195673
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434698|gb|FL195667.1|FL195667
EST:     CAAGGAGGACGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211429501|gb|FL195644.1|FL195644
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|71767511|gb|DR965448.1|DR965448
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211429497|gb|FL195640.1|FL195640
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432098|gb|FL195655.1|FL195655
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211432099|gb|FL195656.1|FL195656
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434700|gb|FL195669.1|FL195669
EST:     NAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437294|gb|FL195680.1|FL195680
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211437298|gb|FL195684.1|FL195684
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|149081119|gb|EE170223.2|EE170223
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211434697|gb|FL195666.1|FL195666
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|5296103|gb|AI782978.1|AI782978
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|148958573|gb|EC904817.2|EC904817
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|211439891|gb|FL195694.1|FL195694
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
EST: gi|149009170|gb|EE041295.2|EE041295
EST:     CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAG                         TGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG
genomic: CAAGGAGGGCGAGGGCTGGGAGACTCCCGAGGTCGGCGACGAGGTTGAAGgtatcctgcc ... aatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttccttgtcaccttgatgactcttccttacttacccatgataatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG
                               tacttac  putative branch site (score: 1)
                                        atgataatatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcctgcccccggttcctcccatgctgcacttgtatctctgttagtgtgatgcggtcagtgagactcgcccagttctggctgcgagttagctgatggaattcgggttctcttgggtttcgtgtcaatttattgttccttgtcaccttgatgactcttccttacttacccatgataatatttcagTGCATTACACGGGCACGCTCCTTGATGGGACAAAATTCGACTCAAGCCGTGATCGTGGAGAACCCTTCAAGTTCAAGCTTGGACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT