1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttcttttagttttttttttgttttcagatgtggaaatggtacgcactacacaggggattttaggactgatatagttgtatttatcaatatcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGAAGAAGTCGGCCCAGTCGTATCCTTCAG
species | Zea mays |
transcript | GRMZM2G096480_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGEST: gi|211354482|gb|FL106822.1|FL106822
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGEST: gi|211354484|gb|FL106824.1|FL106824
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGEST: gi|211354480|gb|FL106820.1|FL106820
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: CTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTNGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCEST: gi|211354488|gb|FL106828.1|FL106828
genomic: CTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCT-GCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGC
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGEST: gi|211354485|gb|FL106825.1|FL106825
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGEST: gi|211352083|gb|FL106816.1|FL106816
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
EST: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCG TTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
genomic: GCTGAGCATGGCCGCCGCTCCCGCGGGCGCTCAGAACCGCTGCGTCTTCGgtaagtgatc ... tcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCG
actacacaggggattttaggactgatatagttgtatttatcaatatcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGAAGAAGTCGGCCCAGTCGTATCCTTCAG
gactgat putative branch site (score: 3)
atatagttgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttttagttttttttttgttttcagatgtggaaatggtacgcactacacaggggattttaggactgatatagttgtatttatcaatatcaattacagTTGGCAACATACCATATGATGCGACGGAGGAGCAGCTCGTGCAGATTTGCGAAGAAGTCGGCCCAGTCGTATCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT