1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgagtatctaaaaatactggtgaatatttggattctttagcacacttatacacttatcttattctctacaatcacatgttgcctctgttctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTGTTGGTGCTCGATTTGGCCCCAAGATAGAGTCAAAGGAAAAGCATGCCA
species | Zea mays |
transcript | GRMZM2G096343_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|89758526|gb|DY687677.1|DY687677
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|76282122|gb|DV021690.1|DV021690
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|211324017|gb|FL189571.1|FL189571
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|71441951|gb|DR823001.1|DR823001
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|211324014|gb|FL189568.1|FL189568
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|148956514|gb|EC902353.2|EC902353
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|211324016|gb|FL189570.1|FL189570
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|149081128|gb|EE170234.2|EE170234
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTEST: gi|71422117|gb|DR805619.1|DR805619
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
EST: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTG GTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
genomic: AGGACGACGAGGCGCCCAAGATCCCCGGCTGCTCCAACGACTTCGTGCTGgtatggggta ... ctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGT
cttatacacttatcttattctctacaatcacatgttgcctctgttctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTGTTGGTGCTCGATTTGGCCCCAAGATAGAGTCAAAGGAAAAGCATGCCA
cctctgttct CT-rich tract
ttatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtatctaaaaatactggtgaatatttggattctttagcacacttatacacttatcttattctctacaatcacatgttgcctctgttctgctgtcagGTAAAAGTGCAGACCTGGATCAACAAAAAAGATAAAGATGAGTTTGTTGGTGTTGGTGCTCGATTTGGCCCCAAGATAGAGTCAAAGGAAAAGCATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - aaaaata
- - - - - - - - -ctggtga
- - - - - - - - - - - - - - - - - - - - gcacact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc