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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacccgacggaggaagagaaatgtgcacgggcgatgtgtgctatgggtaatgatggacggtgcattgatttaatcggttttaagctgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAATCATCCTGATTCCTCTCGTGATGGTCCCTGCTATGGGTGGCTCGGCT

Basic information

species Zea mays
transcript GRMZM2G095611_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285038|gb|DV024606.1|DV024606
EST:     GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATAT                         TTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGGTCAA
genomic: GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATATgtgagtaccc ... tgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
EST: gi|78117552|gb|DV535939.1|DV535939
EST:     GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATAT                         TTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
genomic: GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATATgtgagtaccc ... tgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
EST: gi|71443803|gb|DR824853.1|DR824853
EST:     GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATAT                         TTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
genomic: GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATATgtgagtaccc ... tgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
EST: gi|78090543|gb|DV518917.1|DV518917
EST:     GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATAT                         TTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA
genomic: GGAGCGGCCGGCTCATGTGAAGTACGAGCTCCGTGACACTCCAGGAATATgtgagtaccc ... tgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgggtaatgatggacggtgcattgatttaatcggttttaagctgcgttgcagTTCCTCTGGTGGTATACGGATTCCAGCATTATATTTCCATGGTCGGTTCAATCATCCTGATTCCTCTCGTGATGGTCCCTGCTATGGGTGGCTCGGCT
                           atttaat  putative branch site (score: 4)
                       attgatttaat  TA-rich tract