1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatcgatatgcaattctttagtgttgccttttctccattgttctctttgatgtactcgtacttacttctaatgcagacactgtttttttctatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
species | Zea mays |
transcript | GRMZM2G095323_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAGEST: gi|78125182|gb|DV543566.1|DV543566
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCGGGACCAG AAATTCGGAGAAGCTGTTGGATCCAAEST: gi|148986012|gb|EE029858.2|EE029858
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAGEST: gi|78115630|gb|DV534018.1|DV534018
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAGEST: gi|89756630|gb|DY686595.1|DY686595
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAGEST: gi|88755486|gb|DY539627.1|DY539627
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAGEST: gi|211366787|gb|FL192156.1|FL192156
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
EST: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAG GAATTCGGTGAAGCTGTTGGATCCAG
genomic: TGCTCTCTGTCTCCTCCCTTCTGCTCGTCGACGGATCCCATCAGGACCAGgtactagtac ... tatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
tttgatgtactcgtacttacttctaatgcagacactgtttttttctatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
tttttttctatgtttt CT-rich tract
tttttttctatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcgatatgcaattctttagtgttgccttttctccattgttctctttgatgtactcgtacttacttctaatgcagacactgtttttttctatgttttagGAATTCGGTGAAGCTGTTGGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - tatgcaa
- - - - - - - - - - -tgttgcc
- - - - - - - - - - - - - - - - - - - - - - -tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taatgca