1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtggttcgtgtgtttcatactggaattttttgctctctgtgcagcttcgtgtttgatttgttcctcagctgtgcccagcacttcatatttcatatttgttcttctttacggtagctatttcgactgactgtatttattccaagcacatttttttaatgattgcgttcaaaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCACGTGAAGATCAACCTTGATGGCACTGGTGTCGCCGAGTGTAGCACAGG
species | Zea mays |
transcript | GRMZM2G094255_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211006662|gb|FL081499.1|FL081499
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|31355338|gb|CD439695.1|CD439695
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|88757021|gb|DY541162.1|DY541162
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|50323498|gb|CO518624.1|CO518624
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGGTGEST: gi|91056439|gb|EB166857.1|EB166857
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATA---Ggtggttcgtg ... aaatcttc
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|76293135|gb|DV032703.1|DV032703
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|50325237|gb|CO520363.1|CO520363
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|78107718|gb|DV526136.1|DV526136
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211006668|gb|FL081505.1|FL081505
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|149110134|gb|EE293952.2|EE293952
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211006671|gb|FL081508.1|FL081508
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|71309481|gb|DR791027.1|DR791027
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|78112492|gb|DV530886.1|DV530886
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|76289085|gb|DV028653.1|DV028653
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|94478729|gb|EB707687.1|EB707687
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GTGGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGEST: gi|211006664|gb|FL081501.1|FL081501
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagG---ATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATG
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211006669|gb|FL081506.1|FL081506
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|76010863|gb|DT938033.1|DT938033
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|76284484|gb|DV024052.1|DV024052
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211006670|gb|FL081507.1|FL081507
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|78086465|gb|DV514858.1|DV514858
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|74232836|gb|DT640750.1|DT640750
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGGTGEST: gi|211006666|gb|FL081503.1|FL081503
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATA---Ggtggttcgtg ... aaatcttc
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|211003886|gb|FL081493.1|FL081493
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCEST: gi|101397352|gb|EB820599.1|EB820599
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GTGGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGEST: gi|31611949|gb|CD568571.1|CD568571
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagG---ATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATG
EST: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAG GATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
genomic: GCCTGCCATGGCCGCCGCCGGCCCCCCTACCGCGCATGGAGACTCAATAGgtggttcgtg ... aaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGC
ctgactgtatttattccaagcacatttttttaatgattgcgttcaaaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCACGTGAAGATCAACCTTGATGGCACTGGTGTCGCCGAGTGTAGCACAGG
tcttc CT-rich tract
acatttttttaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggttcgtgtgtttcatactggaattttttgctctctgtgcagcttcgtgtttgatttgttcctcagctgtgcccagcacttcatatttcatatttgttcttctttacggtagctatttcgactgactgtatttattccaagcacatttttttaatgattgcgttcaaaatcttcagGATCTTCTAGGATTGGAGAGGTTAAGAGGGTGACCAAAGAGACAAATGTGCACGTGAAGATCAACCTTGATGGCACTGGTGTCGCCGAGTGTAGCACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA