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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatagatgaatacaatgtacagctgcaaatatttttatgttctttctgcttatctttctaattgccactttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG

Basic information

species Zea mays
transcript GRMZM2G094083_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78104759|gb|DV523177.1|DV523177
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|60398594|gb|DN231410.1|DN231410
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|149077555|gb|EE166252.2|EE166252
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|76013072|gb|DT940242.1|DT940242
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|88755914|gb|DY540055.1|DY540055
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|88755951|gb|DY540092.1|DY540092
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
EST: gi|148945759|gb|EC891040.2|EC891040
EST:     TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAG                         TAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC
genomic: TGGTGAAGTTTCCAACACAAATTCTCAGGATCCGCTAAAGGGAGATAAAGgtataaatag ... ctttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaaatatttttatgttctttctgcttatctttctaattgccactttttgcagTAAGCTCAAAGACAGATAACAGCAGTTCAGACAGTGAAAAGGGTGGCCATCGTACCAAGCGTTCCTTGACGAAAG
                                 ttctaat  putative branch site (score: 2)
                                          ccacttttt  putative PPT
     aatatttttatgttct  TA-rich tract