1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagggcccgctttgctcgtgagtactcgcagatttgcggggtttcaggctgtgctgatgcagatttggccacgctgtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGACACTTCGTATTCGACCTTGGCGAGAACTTGACCCGCCGAT
species | Zea mays |
transcript | GRMZM2G094039_T06 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTG GTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGAEST: gi|148969962|gb|EE020875.2|EE020875
genomic: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTGgtagggcccg ... gtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGA
EST: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTG GTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGAEST: gi|71432790|gb|DR813840.1|DR813840
genomic: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTGgtagggcccg ... gtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGA
EST: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTG GTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGA
genomic: CGCGCCAGGCGCATGACTGTGCCGCCGCGCCGCCACCAGAGCGAGAAGTGgtagggcccg ... gtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGA
gatttgcggggtttcaggctgtgctgatgcagatttggccacgctgtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGACACTTCGTATTCGACCTTGGCGAGAACTTGACCCGCCGAT
tgctgat putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggcccgctttgctcgtgagtactcgcagatttgcggggtttcaggctgtgctgatgcagatttggccacgctgtgcacgcagGTAGCGAGGGGTGGCGCGTCGCCACCATGGAGGGAGGATGACCGTGATGGACACTTCGTATTCGACCTTGGCGAGAACTTGACCCGCCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA