1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatggctcgtacccgtctccgtcttttgcgtggcgcatgggttctgtatgtctcatcatgcgtcgcttgctcacccgcttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCGAGCTCGCGGAGGATGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCA
species | Zea mays |
transcript | GRMZM2G093902_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|74240382|gb|DT648296.1|DT648296
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|148973769|gb|EE024903.2|EE024903
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|211413802|gb|FK965136.1|FK965136
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|211411267|gb|FK965135.1|FK965135
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|211411264|gb|FK965132.1|FK965132
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCNGEST: gi|91052942|gb|EB163360.1|EB163360
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCC-G
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|76013473|gb|DT940643.1|DT940643
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|211411261|gb|FK965129.1|FK965129
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|88757758|gb|DY541899.1|DY541899
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|78109693|gb|DV528109.1|DV528109
genomic: CTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|50339749|gb|CO534875.1|CO534875
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|60346506|gb|DN213479.1|DN213479
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|74244112|gb|DT652026.1|DT652026
genomic: CTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCEST: gi|78024902|gb|DV493289.1|DV493289
genomic: CTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
EST: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAG TTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
genomic: CCGTTCATTCTCCAATGGCGTCGACTCACGCAATCAGCAAGAAGCGGAAGgtatggctcg ... ttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGC
cgcatgggttctgtatgtctcatcatgcgtcgcttgctcacccgcttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCGAGCTCGCGGAGGATGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCA
tgctcac putative branch site (score: 4)
cccgctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggctcgtacccgtctccgtcttttgcgtggcgcatgggttctgtatgtctcatcatgcgtcgcttgctcacccgcttggtcgcagTTCGTGGCGGATGGCGTGTTCTTCGCGGAGCTGAATGAGATGCTGACCCGCGAGCTCGCGGAGGATGGCTACTCCGGCGTCGAGGTCCGCGTCACCCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG