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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctatatcgaatattggtttaacttgcagattctcactaacgaacagagccacatgttctgacaattccaacttacttctgttcattgcacttcttggcagGACATATAGCCGTCGCGCGCTCTTCTTCCTGGGTGGAGCGTCCATGAGGTGGAAGCAGCAGCGTCCCTAGTGCCAGGGTCTGTCGGCTGAGTGCGGGGGA

Basic information

species Zea mays
transcript GRMZM2G093858_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928132|gb|EC872655.2|EC872655
EST:     CGGATTCGCCCGCCGGCCCCATGGGTCCCGTCTTCTCCGGCCGCATTTGG                         GACATATAGCCGTCGCGCGCTCTTCTTCCTGGGTGGAGCGTCCATGAGGTG
genomic: CGGATTCGCCCGCCGGCCCCATGGGTCCCGTCTTCTCCGGCCGCATTTGGgtaagccgta ... ttcttggcagGACATATAGCCGTCGCGCGCTCTTCTTCCTGGGTGGAGCGTCCATGAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagccacatgttctgacaattccaacttacttctgttcattgcacttcttggcagGACATATAGCCGTCGCGCGCTCTTCTTCCTGGGTGGAGCGTCCATGAGGTGGAAGCAGCAGCGTCCCTAGTGCCAGGGTCTGTCGGCTGAGTGCGGGGGA
                       aacttac  putative branch site (score: 2)
                                          cacttctt  putative PPT