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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtccatcaattttgaattgttacagtactgaatgagtcctcagagtgcatagtgctgttctctttttatgtgcctgatagttggtcctcttgtatttcagTTGCTCTTGCGGTAGTTCCCCCAACTGCCACCATGCAGAACGAGGAGGGTAAGACTGTGGACCTCTATGTCCCCAGGAAGTGGTACGTTTGCCTCATCCT

Basic information

species Zea mays
transcript GRMZM2G093574_T03
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093574_T03 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g46490.1 (Oryza sativa), 3'ss of exon 1
---gtccatcaattttgaattgttacagtactgaatgagtcctcagagtgcatagtgctgttctctttttatgtg-cctgatagttggtcctcttgtatttcagTTGCTCTTGCGGTAGTTCCCCCA---ACTGCCACCATGCAGAACGAGGAGGGTAAGACTGTGGACCTCTATGTCCCCAGGAAGTGGTACGTTTGCCTCATCCT
   |     ||| ||  |  |      |  || |  |||||      ||  ||     | |  || | |||||    ||||  |||    | | ||  ||  ||||||| ||| |||  || |  ||   || | || ||||||||||||||||||| |||  ||||||||||| ||||||||||||||                  
actgcatgccaagttctatctagagaggggct-agcgagtctgtttcgt-tattcca-tatattcgtattatgcaatctgactgtttcatc-catgccttgtagTTGCTGTTGTGGTGTTTTCTTCATCTACCGTCATCATGCAGAACGAGGAGGGTCAGATGGTGGACCTCTACGTCCCCAGGAAGTG------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatagtgctgttctctttttatgtgcctgatagttggtcctcttgtatttcagTTGCTCTTGCGGTAGTTCCCCCAACTGCCACCATGCAGAACGAGGAGGGTAAGACTGTGGACCTCTATGTCCCCAGGAAGTGGTACGTTTGCCTCATCCT
                          gcctgat  putative branch site (score: 4)
                                       tcctcttgtatttc  putative PPT
               tctttttat  TA-rich tract