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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggttggtggtgtcagggtggaaataggcgattcaggtaactggtctggtagtgactagtgcatataaaataattggtgtccttggtgctgtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG

Basic information

species Zea mays
transcript GRMZM2G093359_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G093359_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g10310.1 (Oryza sativa), 3'ss of exon 1
------------------------------------------------------------------------------gggttggtggtgt------cagggtggaaataggcgattcaggtaactggtctggtagtgact---agtgcatataa-----aataattggtgtccttggtgc-tgtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG
                                                                               | || |  |         | | | ||| || || ||||  |||   || |      |||| |    |||  || ||     | |||||  |    ||| | | |||||  |||||| ||||||||||||||| |||||||||| || ||||| |||| |||||||||||||||||| || || ||||||||||
gtccgcaccctgcctaccttacctaccttaccttacctactcgtcttgtgttgcggttgatctgctggtggtgagctaagcttagcagcaatttgcgcggcgcggagattggagatttgggtggttgattccactgtgatttttggtggttacaagtagtagtaatttttagatttgtttcgtgtgcatgcagGAAACGCTCAACATGTTCCTGGGGATGGGGCGTCCGGCCTGGAAGGAGGCGCGCGCCACGCTGCAGAAGATCCTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211519253|gb|FK974838.1|FK974838
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514527|gb|FK974805.1|FK974805
EST:     GGGTCTCTTCGACGGGCCCGCGCTCTCCGGGGT-GGCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: GGGTCTCTTCGACGGGCCCGCGCTCTCC-GGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519243|gb|FK974828.1|FK974828
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149090120|gb|EE179418.2|EE179418
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516881|gb|FK974817.1|FK974817
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211153846|gb|FK974847.1|FK974847
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519248|gb|FK974833.1|FK974833
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514524|gb|FK974802.1|FK974802
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516878|gb|FK974814.1|FK974814
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512169|gb|FK974787.1|FK974787
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516887|gb|FK974823.1|FK974823
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149089319|gb|EE178541.2|EE178541
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519241|gb|FK974826.1|FK974826
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514522|gb|FK974800.1|FK974800
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGC
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTT-CTTGGGGATGGGCCGACCGGCGTGGAGGGAGGC
EST: gi|211153843|gb|FK974844.1|FK974844
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512166|gb|FK974784.1|FK974784
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGNAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149008951|gb|EE041170.2|EE041170
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516884|gb|FK974820.1|FK974820
EST:     GGGTCCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: GGGT-CTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211126136|gb|FL125778.1|FL125778
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|29168004|gb|CB411264.1|CB411264
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211153842|gb|FK974843.1|FK974843
EST:     CGGGTCTCTTCGACGGGCCCGCGCTYTCCGGCTCCCCGTGCTTCCACCAG                         GAGACRMCTYAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGC
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACG-CTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGC
EST: gi|211153845|gb|FK974846.1|FK974846
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149104775|gb|EE290237.2|EE290237
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514521|gb|FK974799.1|FK974799
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGARGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|86466218|gb|DY232591.1|DY232591
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAA                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514525|gb|FK974803.1|FK974803
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516888|gb|FK974824.1|FK974824
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512173|gb|FK974791.1|FK974791
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519250|gb|FK974835.1|FK974835
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512171|gb|FK974789.1|FK974789
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514523|gb|FK974801.1|FK974801
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514526|gb|FK974804.1|FK974804
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149094603|gb|EE180134.2|EE180134
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|101398071|gb|EB820910.1|EB820910
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519242|gb|FK974827.1|FK974827
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516883|gb|FK974819.1|FK974819
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|93015898|gb|EB641418.1|EB641418
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514531|gb|FK974809.1|FK974809
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512177|gb|FK974795.1|FK974795
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516875|gb|FK974811.1|FK974811
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516879|gb|FK974815.1|FK974815
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519246|gb|FK974831.1|FK974831
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516886|gb|FK974822.1|FK974822
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514530|gb|FK974808.1|FK974808
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|31350712|gb|CD435069.1|CD435069
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519251|gb|FK974836.1|FK974836
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512168|gb|FK974786.1|FK974786
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514532|gb|FK974810.1|FK974810
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514520|gb|FK974798.1|FK974798
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211153840|gb|FK974841.1|FK974841
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512170|gb|FK974788.1|FK974788
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|31355275|gb|CD439632.1|CD439632
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCTGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211519245|gb|FK974830.1|FK974830
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|71424525|gb|DR806344.1|DR806344
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211153841|gb|FK974842.1|FK974842
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|148983250|gb|EE029217.2|EE029217
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|149106513|gb|EE188405.2|EE188405
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514529|gb|FK974807.1|FK974807
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516889|gb|FK974825.1|FK974825
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211514528|gb|FK974806.1|FK974806
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGARGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|89253028|gb|DY624814.1|DY624814
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211516880|gb|FK974816.1|FK974816
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
EST: gi|211512167|gb|FK974785.1|FK974785
EST:     CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAG                         GAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG
genomic: CGGGTCTCTTCGACGGGCCCGCGCTCTCCGGCTCCCCGTGCTTCCACCAGgtgcctgctc ... gtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtagtgactagtgcatataaaataattggtgtccttggtgctgtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG
              tgcatataaaataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gggttggtggtgtcagggtggaaataggcgattcaggtaactggtctggtagtgactagtgcatataaaataattggtgtccttggtgctgtgcgcgcagGAGACGCTCAACATGTTCTTGGGGATGGGCCGACCGGCGTGGAGGGAGGCGCGCGCCACGCTACAAAAAATCCTCTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG