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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggtaccccaataccctctgtcgcttcgataccgtcagctcggctgtgtgaagaagtctcgctctcgcgcccacgctcactctctcagtcacatgctgcgttcgatgcgatttctagGGAGCACCGCGGAGGCCGCGCTGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGGCGGTGCCCATCGTTGATCT

Basic information

species Zea mays
transcript GRMZM2G092862_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092862_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os03g17600.1 (Oryza sativa), 3'ss of exon 1
gtcggtaccccaataccctctgtcgcttcgataccgtcagctcggctgtgtgaagaagtctcgctctcgcgcccacgctcactctctcagtcacatgctgcgttcgatgcgatttctagGGAGCACCGCGGAG------GCCGCGCTGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGGCGGTGCCCATCGTTGATCT
                                     |  | ||||   |        ||   | ||||||  || | |      || |  | | || |  |  |||||  ||||  ||||||  ||| ||||      || |||| |  ||| ||||||||| |    ||||||||||| || ||||||||||||||||| |||||||||||| | ||      
--------------------------------gtaagcctcccggccccgctcctccttcctcccctcgcgtgcatggtg-----ctgaaccgc-tgatatgcgcgatgatatttgcagGGAGGGCCGGGGAGGCAGCTGCGGCGCCGGTGGAAGGGCTCGCGAAATCCCTGCAGGGGGTGGAGGTGTTCGATCTGAGCGGAAAGGCGGTGCCCGTTGT------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgcgcccacgctcactctctcagtcacatgctgcgttcgatgcgatttctagGGAGCACCGCGGAGGCCGCGCTGTCGGAGGGGCTCGCGCAGAAGCTGCAGGGGGTCGATGTGTTCGATCTGAGCGGCAAGGCGGTGCCCATCGTTGATCT
           cgctcac  putative branch site (score: 3)
                                                tttct  putative PPT
                                               atttcta  TA-rich tract