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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatcattaacaggcacctttatcctattttcttccatttatcaatagctgacccttgtatatattcatactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCCTTTCAGAAAACACATCCTTGCCTGTAAATGATAAGTCATCAGACGAACT

Basic information

species Zea mays
transcript GRMZM2G092588_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092588_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g33580.1 (Oryza sativa), 3'ss of exon 3
gtaaaaatcattaacaggcacctttatcctattttcttccatttatcaatagctgacccttgtatat---attcatact---gttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCCTTTCAGAAAACACATCCTTGCCTGTAAATGATAAGTCATCAGACGAACT
      ||   ||| | ||| |  | |  |||||  |||||||||| |   | || ||||  |||||   |||  ||||   || |||| |   ||||||||||||||||| |||||| ||| | |||||||||||||||||||| | |  ||||||| |  | | ||||||| ||| | || || ||
----gtatgcataaaaagcaacactgttgtatttcattccatttattaggtgatggccctcttatatgctattggtactatggtgcagAACTACGTGACAAACTAGTGGAGACATTGTATAGCAGACAAAATCATTCCCTTTCAGCAGATTCATCCTTACTCGGAGATGATAACTCAACGGATGAGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32810315|gb|CD962549.1|CD962549
EST:     TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAG                         ATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
genomic: TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatca ... tactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
EST: gi|32823218|gb|CD962940.1|CD962940
EST:     TCTTGTAAGGCAGTCTGAACCATCTTTGGATCAACTTGGTGTACGGAGAG                         ATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC
genomic: TCTTGTAAGGCAGTCTGAACCATTTTTGGATCAACTTGGTGTACGGAGAGgtaaaaatca ... tactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctattttcttccatttatcaatagctgacccttgtatatattcatactgttcagATCAGTGTGACAAACTAGTGGAGGCATTGTGTAGGAAACAAAATCATTCCCTTTCAGAAAACACATCCTTGCCTGTAAATGATAAGTCATCAGACGAACT
                       agctgac  putative branch site (score: 3)
                                ttgtatatattcata  TA-rich tract