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...gctagagcttgcgttttggatgtttttttcgagattgatggtggtttggtcctgttgttgatcgatgtggctgatatgtacttcttaattcgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATGGTAACGGGGAGCAGACAGTGAGCTTCAACGCTGCTGGTGCTGGTTCAT
species | Zea mays |
transcript | GRMZM2G092497_T06 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|78109829|gb|DV528245.1|DV528245
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|28873635|gb|CB329598.1|CB329598
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|211400336|gb|FL375597.1|FL375597
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACACGTGAEST: gi|211134850|gb|FL400322.1|FL400322
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACA-GTGA
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATMGGCAGTGATAACTTCGAATGGGACAGTGAEST: gi|71325873|gb|DR799620.1|DR799620
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGAT-GGCAGTGATAACTTCGAATGGGACAGTGA
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|76913046|gb|DV164985.1|DV164985
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|91873568|gb|EB403525.1|EB403525
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|71447185|gb|DR828235.1|DR828235
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAA---TG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|74238865|gb|DT646779.1|DT646779
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|149074707|gb|EE163131.2|EE163131
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATEST: gi|89762158|gb|DY689885.1|DY689885
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
EST: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTG CACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
genomic: GCGTCGGAGAGGTAGCCCCCGGAGCTCTTCGCGGAGGCTCGGGAATGGTGgtgagagttt ... cgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGAT
ttggtcctgttgttgatcgatgtggctgatatgtacttcttaattcgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATGGTAACGGGGAGCAGACAGTGAGCTTCAACGCTGCTGGTGCTGGTTCAT
tcttaat putative branch site (score: 3)
ttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctagagcttgcgttttggatgtttttttcgagattgatggtggtttggtcctgttgttgatcgatgtggctgatatgtacttcttaattcgtgtcacagCACTGGGTTAGCGACAGTGATGGCAGTGATAACTTCGAATGGGACAGTGATGGTAACGGGGAGCAGACAGTGAGCTTCAACGCTGCTGGTGCTGGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -agcttgc
- - - - - - - -ttggatg
- - - - - - - - - - - - - - - - -attgatg
- - - - - - - - - - - - - - - - - - - - - - - - - cctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctgat