Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtatgactttcttcataaagatattgacttccttaattaaaaagggagtgctaaagtgctaaatagcttattgatgtcaagtgttccttttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTGTACAAATGTGCATTACGCTACCTTTATCATAAACCAAATCATCTCTGTT

Basic information

species Zea mays
transcript GRMZM2G092244_T03
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211321600|gb|FL062342.1|FL062342
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
EST: gi|86473756|gb|DY240126.1|DY240126
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
EST: gi|78080314|gb|DV508726.1|DV508726
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
EST: gi|76287506|gb|DV027074.1|DV027074
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
EST: gi|101389627|gb|EB816747.1|EB816747
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
EST: gi|74235718|gb|DT643632.1|DT643632
EST:     CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAG                         GTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG
genomic: CGTGGTTGGTGAGGCGATTCGTGGTCGGGAGCTTCCGTTTCTCTTCGGAGgtaggagtat ... tttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggagtgctaaagtgctaaatagcttattgatgtcaagtgttccttttctttcagGTGAAGTGGATCTGACCTACTGTAGGGGAAAGAGCAAAGTACATTATCTTGTACAAATGTGCATTACGCTACCTTTATCATAAACCAAATCATCTCTGTT
                                      tgttccttttctttc  CT-rich tract
                        ttattgat  TA-rich tract