1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
species | Zea mays |
transcript | GRMZM2G092129_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212127|gb|FL050021.1|FL050021
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|211214697|gb|FL050035.1|FL050035
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|211162012|gb|FL219539.1|FL219539
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212138|gb|FL050032.1|FL050032
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|148971559|gb|EE022272.2|EE022272
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212134|gb|FL050028.1|FL050028
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|211162015|gb|FL219542.1|FL219542
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212131|gb|FL050025.1|FL050025
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|74241137|gb|DT649051.1|DT649051
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212129|gb|FL050023.1|FL050023
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212132|gb|FL050026.1|FL050026
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGNGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAAGEST: gi|86467094|gb|DY233464.1|DY233464
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGGTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAGGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162016|gb|FL219543.1|FL219543
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212136|gb|FL050030.1|FL050030
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGGATATCAAAGGTGCTTGGGTCTCTCAGCGGGGACGACCTCAGGAEST: gi|71331353|gb|DR802511.1|DR802511
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGG-ATATCAA-GGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGA
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162018|gb|FL219545.1|FL219545
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211212128|gb|FL050022.1|FL050022
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGEST: gi|211162017|gb|FL219544.1|FL219544
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
EST: CCGGCTCGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAG GCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
genomic: CCGGCTGGAGCCGCGTCATGCGCCGACGCAGCACGAAGCGCATCGCCAAGgtgagttggt ... cttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAG
cttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
ttgcgtgtctctctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttggttagggttgtgccgctgcgagcagactgtaataagcctcgccccgttctcgctacaccgtggagttggatcgttcaattcaggactaactgtgaggcttggtctttgtcggatttgagtttcgttgcgtgtctctctcttccttgctgtagGCTGCGGATATCAAGGTGCTTGGGTCTCTCAGCAGGGACGACCTCAGGAAGCTGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGC
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