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...ataagtatcaaccgttctatttggtctgacttggctgattttgcagaaaccaaaaatttgaagttaaagactttctaatatgttatttgattggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGACAGAATTGGATCACCAAGGTCAAAGATAAATTCAGATTTCCTGGAGGCG
species | Zea mays |
transcript | GRMZM2G092120_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCTAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAG GTCTGGGTTAGEST: gi|74244376|gb|DT652290.1|DT652290
genomic: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAGgttagcatgt ... ttggatgcagGTCTGGTTTAG
EST: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAG GTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGEST: gi|71418431|gb|DR804441.1|DR804441
genomic: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAGgttagcatgt ... ttggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGG
EST: CGCCCAACTGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAG GTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAEST: gi|148966913|gb|EE018043.2|EE018043
genomic: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAGgttagcatgt ... ttggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAA
EST: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAG GTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGA
genomic: CGCCCAACGGGTACAAGGCGCCCATCCCCTGGCCTCGGAGCAGAGACGAGgttagcatgt ... ttggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGA
gaaaccaaaaatttgaagttaaagactttctaatatgttatttgattggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGACAGAATTGGATCACCAAGGTCAAAGATAAATTCAGATTTCCTGGAGGCG
tttctaatatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagtatcaaccgttctatttggtctgacttggctgattttgcagaaaccaaaaatttgaagttaaagactttctaatatgttatttgattggatgcagGTCTGGTTTAGCAACGTGCCTCACACAAGATTGATTGATGACAAAGGAGGACAGAATTGGATCACCAAGGTCAAAGATAAATTCAGATTTCCTGGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG