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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagcttcgccgctctcaggccgagatttcagcgggattctcccgtgttccagaagctgatctagtgtctatctgcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCGGATCTGGTGTACCGCTTCTATCAGGAGGCTAGTCGCCTCGGCCGCCCCG

Basic information

species Zea mays
transcript GRMZM2G091995_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091995_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g29480.1 (Oryza sativa), 3'ss of exon 1
gtaagcagcttcg--------ccgctctcaggc--cgagatttc-agcgggattctcc----cgtgttccagaagctgatcta-----------gtgtctatctgcgcgc---gcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCGGATCTGGTGTACCGCTTCTATCAGGAGGCTAGTCGCCTCGGCCGCCCCG
|||||| ||||||         | ||||  ||   ||||||||  || ||| || | |    |||| | | |  ||||||||            | | ||   ||| | |   |||||||||||||||||||||||||||||||||||   | ||||||||||| ||||||||||||||||| ||||| ||||| || || ||||||||||||||  
gtaagctgcttcggtcccctgtctctctgtggttgcgagatttggaggggggtttttctcgccgtggttccgt-gctgatctgcaatggcgggggggactgggtgctctctctgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCAGATCCTGCACCAGTCGCCGGATCTGGTGTACCGGTTCTACCAGGACGCCAGCCGCCTCGGCCGCCCGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71766908|gb|DR964845.1|DR964845
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|71768664|gb|DR966601.1|DR966601
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|37425130|gb|CF650301.1|CF650301
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|149078936|gb|EE167772.2|EE167772
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|50336246|gb|CO531372.1|CO531372
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148964753|gb|EC906012.2|EC906012
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|94473274|gb|EB702232.1|EB702232
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393824|gb|FK983472.1|FK983472
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396446|gb|FK983487.1|FK983487
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148956890|gb|EC902811.2|EC902811
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396444|gb|FK983485.1|FK983485
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396441|gb|FK983482.1|FK983482
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393820|gb|FK983468.1|FK983468
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393826|gb|FK983474.1|FK983474
EST:     GCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTNCTGCGCAAGTK                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: GCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGT-CTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|149047149|gb|EE048155.2|EE048155
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393819|gb|FK983467.1|FK983467
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148959103|gb|EE010585.2|EE010585
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396445|gb|FK983486.1|FK983486
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396437|gb|FK983478.1|FK983478
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|148957059|gb|EC903023.2|EC903023
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211396443|gb|FK983484.1|FK983484
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGTGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393821|gb|FK983469.1|FK983469
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|91055356|gb|EB165774.1|EB165774
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
EST: gi|211393825|gb|FK983473.1|FK983473
EST:     CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTG                         GTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG
genomic: CGCCGCAACCTGTCGCCCAGGCCCCCGAGGCACCGCCGTCTGCGCAAGTGgtaagcagct ... gcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagcgggattctcccgtgttccagaagctgatctagtgtctatctgcgcgcgcagGTGGGCAACGCGTTCGTGCAGCAGTACTACCTCGTGCTGCACCAGTCACCGGATCTGGTGTACCGCTTCTATCAGGAGGCTAGTCGCCTCGGCCGCCCCG
                         agctgat  putative branch site (score: 4)