1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gccctctagtatctgcctcgctcggaaattatgcaacgcacgctgcttgctattttttcagttctgttctgatgcttgtgggcctgctgtttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGAAAAAGCTAACCTACATCG
species | Zea mays |
transcript | GRMZM2G091494_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAG CTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGEST: gi|148965874|gb|EE016775.2|EE016775
genomic: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAGgtctgtgacc ... ttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATG
EST: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAG CTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGEST: gi|94477304|gb|EB706262.1|EB706262
genomic: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAGgtctgtgacc ... ttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATG
EST: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAG CTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGEST: gi|149077035|gb|EE165691.2|EE165691
genomic: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAGgtctgtgacc ... ttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATG
EST: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAG CTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATG
genomic: CCGGCCTGCTCGTCGAGCGCGTCCGCGGCGTCCCCGCTGAGTTCATCAAGgtctgtgacc ... ttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATG
cttgctattttttcagttctgttctgatgcttgtgggcctgctgtttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGAAAAAGCTAACCTACATCG
ttctgat putative branch site (score: 3)
tattttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctctagtatctgcctcgctcggaaattatgcaacgcacgctgcttgctattttttcagttctgttctgatgcttgtgggcctgctgtttgaatttagCTGGCTGCACCAATGGGGACCCTGGGGAGAGCTGCTGCTGATATGCAGATGAAAAAGCTAACCTACATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG