1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGTGGCGCGGGTGGAGCGGATGGAGTCGGACGGGCGCGGCAGCGTGAGGGT
species | Zea mays |
transcript | GRMZM2G091265_T05 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|211292773|gb|FL412753.1|FL412753
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: CATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|9952858|gb|BE639441.1|BE639441
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|50325986|gb|CO521112.1|CO521112
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|148933222|gb|EC876874.2|EC876874
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|211408410|gb|FK952129.1|FK952129
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|211469231|gb|FL410779.1|FL410779
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: CATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|78091413|gb|DV519787.1|DV519787
genomic: CATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|94476085|gb|EB705043.1|EB705043
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|50325839|gb|CO520965.1|CO520965
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGEST: gi|71434213|gb|DR815263.1|DR815263
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
EST: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAG TGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
genomic: GCGGGATGTCGACGCCTATACCATCAAGGGCACCAACAAGGTGGTCCGAGgtaagccctg ... aaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACG
ctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGTGGCGCGGGTGGAGCGGATGGAGTCGGACGGGCGCGGCAGCGTGAGGGT
ctctgac putative branch site (score: 3)
taaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccctgccagtccgtgctcttgatcgagcccgtcgcgtgctctagtctaaagatttgagctctgacgtctcttgttgctctgcgtgaaccgtgaagTGGGGGACTGCGTGCTGATGCGGCCAGCGGACACGGACAACCCGCCGTACGTGGCGCGGGTGGAGCGGATGGAGTCGGACGGGCGCGGCAGCGTGAGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA