1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcaaaccactcttttagctgtagagctcattgtttctccagttgatggcattttttctgaatagaaagtaactatagtcagtgtctattttgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCTGAGAGTGGAGTATTTGTAAATGTGGATAGTGAATTTGATTTAGAGAAT
species | Zea mays |
transcript | GRMZM2G090722_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|148944671|gb|EC889806.2|EC889806
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|149085087|gb|EE174595.2|EE174595
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|9731558|gb|BE510310.1|BE510310
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: GGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|148964387|gb|EC905763.2|EC905763
genomic: GGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|76017251|gb|DT944421.1|DT944421
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|50331439|gb|CO526565.1|CO526565
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|148941210|gb|EC886099.2|EC886099
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|148982703|gb|EE028519.2|EE028519
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|5268592|gb|AI770556.1|AI770556
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGEST: gi|6012246|gb|AW061788.1|AW061788
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGG
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GNGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|22473300|gb|BU037780.1|BU037780
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|87156171|gb|DY400960.1|DY400960
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|211304064|gb|FK992672.1|FK992672
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|30031720|gb|CB833571.1|CB833571
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCEST: gi|29167998|gb|CB411258.1|CB411258
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|149059656|gb|EE156999.2|EE156999
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCEST: gi|148940638|gb|EC885449.2|EC885449
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
EST: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAG GTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
genomic: AGCGGCAACGAGCTCCGACTCGCCCTCCAGGCGGGATTCGACCCCGCCAGgtgcggctct ... tgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGC
tggcattttttctgaatagaaagtaactatagtcagtgtctattttgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCTGAGAGTGGAGTATTTGTAAATGTGGATAGTGAATTTGATTTAGAGAAT
aagtaac putative branch site (score: 5)
tctatttt putative PPT
tattttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaaccactcttttagctgtagagctcattgtttctccagttgatggcattttttctgaatagaaagtaactatagtcagtgtctattttgaagatcagGTGTATATTTAACGGAAATGGGAAGACACTCGAAGATCTTAAATTGGCTGCTGAGAGTGGAGTATTTGTAAATGTGGATAGTGAATTTGATTTAGAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
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-caaacca
- - - - - - - - gctgtag
- - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaaa