1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtatttatgaagtatttttctttaactatcacatttttaaaaatattctgaaaaaatctttgaaaacttaaacaggattaacattcaaaatttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA
species | Zea mays |
transcript | GRMZM2G090573_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACCTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|78111122|gb|DV529519.1|DV529519
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|149094931|gb|EE180514.2|EE180514
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|91054250|gb|EB164668.1|EB164668
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|71437206|gb|DR818256.1|DR818256
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|33467055|gb|CF244104.1|CF244104
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|6166608|gb|AW144872.1|AW144872
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|78118154|gb|DV536541.1|DV536541
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TTGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTEST: gi|88746123|gb|DY530264.1|DY530264
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
EST: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCGTGGAAGAGAAG GAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
genomic: TCGACCCCGACGCCTACGTGCAGTCCAAGTGCCGCGCCATGGACGAGAAGgtgaggaatc ... tttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCT
ttctgaaaaaatctttgaaaacttaaacaggattaacattcaaaatttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA
gattaac putative branch site (score: 38)
attaacattcaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatgaagtatttttctttaactatcacatttttaaaaatattctgaaaaaatctttgaaaacttaaacaggattaacattcaaaatttattacagGAAATAAGGCACCTGTGTTCCTACTTGCAAGATCTAAAGAAGGCTTCTGCTGAAGAGATGCGCAGAAGTGTTTATGCAAATTATGCTGCATTCATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC