1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaccttggctacagtacgcaatgccaatttagtttgctagaaaaatttatgcaatcatggaattttctgagattttgaacccgtaaatcatgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCAAGGAAAAGAGCAACTTCCTCCGGTACCCTTTGAACGAGGAGTTGGTCT
species | Zea mays |
transcript | GRMZM2G090338_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211421434|gb|FL301670.1|FL301670
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|91877462|gb|EB407419.1|EB407419
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|148995109|gb|EE034403.2|EE034403
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|18649814|gb|BM498633.1|BM498633
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: GCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211286336|gb|FL301657.1|FL301657
genomic: GCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAAGTTAAGCGA-GCAAGGGTTGAGATAAEST: gi|149079519|gb|EE168499.2|EE168499
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAA-GTTAAGCGAAGCAAGG-TTGAGATAA
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|31351460|gb|CD435817.1|CD435817
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGCGCGTCCGCGGGTAGCATACGAGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|76917904|gb|DV167066.1|DV167066
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|101384564|gb|EB814327.1|EB814327
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|12047113|gb|BF729252.1|BF729252
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: GCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGATGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|148947630|gb|EC893110.2|EC893110
genomic: GCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211501913|gb|FL162222.1|FL162222
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211319289|gb|FL162214.1|FL162214
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|149085315|gb|EE174821.2|EE174821
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|87153847|gb|DY398636.1|DY398636
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: GCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|149014457|gb|EE044072.2|EE044072
genomic: GCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211286335|gb|FL301656.1|FL301656
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211286345|gb|FL301666.1|FL301666
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAG-ACGCTTCCTGAAGT-AAGCGAAGCAAGGEST: gi|71330580|gb|DR802058.1|DR802058
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTC-TGAAGTTAAGCGAAGCAAGG
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|76015452|gb|DT942622.1|DT942622
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|78179648|gb|DV550021.1|DV550021
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: GGCGGCGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGATGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCEST: gi|211319287|gb|FL162212.1|FL162212
genomic: GGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
EST: CGGCCCGGCCGGGCGGTGCGTCCGCGGGCAGCATACGCGCCGTCTCCGCG CCTGCGAAGAAGGATGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
genomic: CGGCCCGGCCGGGCGGTGCGTCCGCGGGTAGCATACGCGCCGTCTCCGCGgtgagtctgc ... atgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATC
atttatgcaatcatggaattttctgagattttgaacccgtaaatcatgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCAAGGAAAAGAGCAACTTCCTCCGGTACCCTTTGAACGAGGAGTTGGTCT
aattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccttggctacagtacgcaatgccaatttagtttgctagaaaaatttatgcaatcatggaattttctgagattttgaacccgtaaatcatgcctgcagCCTGCGAAGAAGGACGCTTCTGAAGTTAAGCGAAGCAAGGTTGAGATAATCAAGGAAAAGAGCAACTTCCTCCGGTACCCTTTGAACGAGGAGTTGGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - gctacag
- - - - - - - - - gcaatgc
- - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - -ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catggaa