Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acagtcgggggagctgtgtgtgtggttactacttactactcgaggccgcatttggtgtggatgataagttggcttgggcctgcgcctgattgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGGTTCCAGCCCAGCGGAAGTGCAGAATTTTG

Basic information

species Zea mays
transcript GRMZM2G090087_T02
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090087_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 3'ss of exon 1
acagtcgggggagctgtgtgtgtggttactacttactactcgaggccgcatttggtgtggatga-taagttggcttgggcctgcgcctgattgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGGTTCCAGCCCAGCGGAAGTGCAGAATTTTG
 |  |      | |  | | | |||   | |      | ||| ||      |||  |  ||||| || | | |  |   | |  |  ||||||||| |||||||| ||||||||||| ||||||||||||| ||||| || ||  |||||||||| ||||| |||||||||||||||||||
tcgctttttccaccgttttttttgggagcgatccggca-tcgtggttttggttgcgggcgatgaatatggtcgactcatcgtttgggtgattgattggcagGTGGATGCACACGCCGCCATTCGCGACGGTGTCTCCTCAGGAAATTTCAGGTTCGAGCCCGGCGGAAGTGCAGAATTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211124834|gb|FL408235.1|FL408235
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|60339011|gb|DN205984.1|DN205984
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211368406|gb|FL377758.1|FL377758
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211306987|gb|FL381273.1|FL381273
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211108216|gb|FL373163.1|FL373163
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211484357|gb|FL369749.1|FL369749
EST:     CAGCACCTTGCTGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211082384|gb|FL402151.1|FL402151
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|149071327|gb|EE159720.2|EE159720
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211017676|gb|FL418607.1|FL418607
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211332403|gb|FL404941.1|FL404941
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211336214|gb|FL371115.1|FL371115
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|148958687|gb|EC904955.2|EC904955
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|60346857|gb|DN213830.1|DN213830
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211219293|gb|FL379956.1|FL379956
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211451569|gb|FL371208.1|FL371208
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211040046|gb|FL419087.1|FL419087
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211311129|gb|FL384825.1|FL384825
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211089833|gb|FL381143.1|FL381143
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211332038|gb|FL380497.1|FL380497
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211431745|gb|FL408447.1|FL408447
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211266997|gb|FL420589.1|FL420589
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211521606|gb|FL412480.1|FL412480
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211535838|gb|FL377068.1|FL377068
EST:     CA-SACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211204247|gb|FL383416.1|FL383416
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|8367516|gb|BE050461.1|BE050461
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211112947|gb|FL390931.1|FL390931
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|60399068|gb|DN231882.1|DN231882
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211278595|gb|FL376807.1|FL376807
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211533298|gb|FL400243.1|FL400243
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|94472231|gb|EB701189.1|EB701189
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211384979|gb|FL400571.1|FL400571
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211002755|gb|FL375715.1|FL375715
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211390609|gb|FL418018.1|FL418018
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCG--ACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211087311|gb|FL378409.1|FL378409
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211059652|gb|FL374524.1|FL374524
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211261878|gb|FL409707.1|FL409707
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211521602|gb|FL412476.1|FL412476
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211410539|gb|FL375656.1|FL375656
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211337034|gb|FL418406.1|FL418406
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211387597|gb|FL400573.1|FL400573
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211254108|gb|FL390493.1|FL390493
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211434782|gb|FL426801.1|FL426801
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|27522050|gb|CA989156.1|CA989156
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211524408|gb|FL405472.1|FL405472
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211069274|gb|FL419947.1|FL419947
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211156670|gb|FL403860.1|FL403860
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211003075|gb|FL395295.1|FL395295
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211309737|gb|FL424540.1|FL424540
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGANGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG
EST: gi|211214281|gb|FL374170.1|FL374170
EST:     CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAG                         GTGGCTGCACACGCCGTCATTCGCGACGGTGTCTCCGCAAGAGGTTTCAGG
genomic: CAGCACCTTGCCGCCGTCCGTCGATCTGCACCCTTTGCGTGCGTGTCCAGgtgatcccgc ... tgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcatttggtgtggatgataagttggcttgggcctgcgcctgattgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGGTTCCAGCCCAGCGGAAGTGCAGAATTTTG
                                          gattgat  putative branch site (score: 4)
                                           attgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
acagtcgggggagctgtgtgtgtggttactacttactactcgaggccgcatttggtgtggatgataagttggcttgggcctgcgcctgattgatttgcagGTGGCTGCACACGCCGTCATTCGCGACGGTTTCTCCGCAAGAGGTTTCAGGTTCCAGCCCAGCGGAAGTGCAGAATTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG