1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttctaaagtctaaacgcaattgtcatacatccaggacagacgaaaggaaaatatcgtccacttcaagcattttatttaatgtttaaatttgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTGGTGCGAATGCTGGCATATCTTGTGTCATGAGAAGGATAAGAGGAGTGG
species | Zea mays |
transcript | GRMZM2G089507_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCCG--GGG-ACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211429245|gb|FL301722.1|FL301722
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211431845|gb|FL301733.1|FL301733
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211429248|gb|FL301725.1|FL301725
genomic: -GCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211431842|gb|FL301730.1|FL301730
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCG--GGG-ACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCC-TGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|149111703|gb|EE190848.2|EE190848
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211431844|gb|FL301732.1|FL301732
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: YGCCG--GGG-ACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211429249|gb|FL301726.1|FL301726
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTARCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211429240|gb|FL301717.1|FL301717
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCG--GGG-ACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|149073934|gb|EE162261.2|EE162261
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211431847|gb|FL301735.1|FL301735
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|148947689|gb|EC893170.2|EC893170
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|211431843|gb|FL301731.1|FL301731
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|20507320|gb|BQ279578.1|BQ279578
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: CGCCG--GGG-ACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTEST: gi|149111704|gb|EE190849.2|EE190849
genomic: CGCCGCCGGGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
EST: GGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAG GCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
genomic: GGGACCGACCCAAAGGTCTTGGCCTCCTTCAAGCAAGCGCAGgtactggcct ... tgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACT
aggaaaatatcgtccacttcaagcattttatttaatgtttaaatttgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTGGTGCGAATGCTGGCATATCTTGTGTCATGAGAAGGATAAGAGGAGTGG
atttaat putative branch site (score: 25)
ttcaagcattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttctaaagtctaaacgcaattgtcatacatccaggacagacgaaaggaaaatatcgtccacttcaagcattttatttaatgtttaaatttgaattatagGCTTTAGCGGGTGGACCCCTGGTGCAAGCACGAAACTTTGCGGTCATGACTGGTGCGAATGCTGGCATATCTTGTGTCATGAGAAGGATAAGAGGAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - -aacgcaa
- - - - - - - - - - - - - -acatcca
- - - - - - - - - - - - - - - - - - - - - - aaggaaaa