Sequence
atgc intronic sequence ATGC exonic sequence...agtgcatattgatttgtagcaattctactcatggcagtaatatttctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G089454_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 3'ss of exon 1
------------------------------------------------agtgcatattgatttgtagcaattctactcatggcagtaatatttctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
| | || | | || | | |||||||| || | || | || |||||||||||| ||||| || ||||| |||||||||||||| |||||||||||||||| ||||| || || ||||||||||||
aaatattagaacatacgccaatattaagtactatgcaacatgtttccttataaacat-gtctagtgaaaggtttactcatgacaattatgtc-ctccaccagCTTGTTTTTCAAGCAGGAGATGGAGCTCTCCCTGGTTGGCCTGCAGAATGCTGGGAAAACATCACTAGTTAATGCTGTTGCT----------------------------------------------------------------
upper sequence: GRMZM2G089454_T04 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 1
-----------------------------------agtgcatattgatttgtag-caattctactcatggcagtaa-----tattt-----ctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
| || ||| || ||| | | ||| || | | ||| | | |||||||||||||||| || || |||||||| || || ||||| | ||||||||||| ||||| || || |||||||| |||||
gaaaagccttaaaagttgagcttaggttaattggttttaagggttccttttaagtcaagccctttaatgattgtgagtttctgtttgttggttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCT----------------------------------------------------------------
upper sequence: GRMZM2G089454_T04 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA14G39540.1 (Glycine max), 3'ss of exon 1
--------------------------------------------------agtgcatattgatttgtagcaattctactcatggcagtaatatttctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
|| | | || | ||| | ||| | | | || | | | | |||||||||||||||| || || |||||||| || || ||||| | ||||||||||| ||||| || || |||||||| |||||
cgagattcaggaaagccttaaaagttgagcctaggttatttgattttaagggttccttttaagttgagg--attgtgacttt--ctgtttgttgtttgtgtcagCTTGTTTTTTAAACAGGAGATGGAACTTTCACTTGTTGGCCTTCAGAATGCTGGCAAGACTTCTCTTGTCAATGCAATTGCT---------------------------------------------------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
ttgttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agtgcatattgatttgtagcaattctactcatggcagtaatatttctatttcagcttgttttttaagcaagaaatggaactctccctggttgggttgcagAATGCTGGGAAGACATCGCTGGTCAATGCTGTTGCTGTATGCATCAACTCAGTCAAGATACATTACCATGTTATCTGGTGTTTTGATTTTAATTCATGGC
-gtgcata
- - - - - - - tgtagca
- - - - - - - - - - - - - - -catggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccctgg