Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattgctctagtttctgtattttcttggacttgatgatcccaatttcccgttgtatttacttgtttcctcttcccctatgtttcccaatgtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG

Basic information

species Zea mays
transcript GRMZM2G088974_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415727|gb|FL269515.1|FL269515
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413169|gb|FL269492.1|FL269492
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415719|gb|FL269507.1|FL269507
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGANCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|71315047|gb|DR794148.1|DR794148
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|149080861|gb|EE169941.2|EE169941
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|76013309|gb|DT940479.1|DT940479
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413178|gb|FL269501.1|FL269501
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGC-GA-SATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415724|gb|FL269512.1|FL269512
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|6564144|gb|AW231766.1|AW231766
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|24961621|gb|CA483621.1|CA483621
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|86467595|gb|DY233965.1|DY233965
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCTTTTTGCACTCTGACTTTCAATCGAGGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413170|gb|FL269493.1|FL269493
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCSAG                         AGAGTGCAGCGGACG-ATTTTTGCACTCTGACATTCAATCGAAGGCAGACA
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGA-GCA-TTTTGCACTCTGACATTCAATCGAAGGCAGACA
EST: gi|211413182|gb|FL269505.1|FL269505
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGNAS-ATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413176|gb|FL269499.1|FL269499
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|101382115|gb|EB813113.1|EB813113
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|71766943|gb|DR964880.1|DR964880
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|93282631|gb|EB674895.1|EB674895
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413171|gb|FL269494.1|FL269494
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413173|gb|FL269496.1|FL269496
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|67018692|gb|CO447441.1|CO447441
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413174|gb|FL269497.1|FL269497
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413179|gb|FL269502.1|FL269502
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415723|gb|FL269511.1|FL269511
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGCAS-ATTTTWGCACTCTGACATTCAATCGAAGGCAGACAA
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTT-GCACTCTGACATTCAATCGAAGGCAGACAA
EST: gi|211415721|gb|FL269509.1|FL269509
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGMCTCTGCCAG                         AGAGTGCAGC-GA-SATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415726|gb|FL269514.1|FL269514
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGC-GA-CSATTTTGCACTCTGACATTCAATACGAAGGCAGACA
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGC-ATTTTGCACTCTGACATTCAAT-CGAAGGCAGACA
EST: gi|211415722|gb|FL269510.1|FL269510
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGNA-SATTTTGCACTCTGACATTCAATSGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413168|gb|FL269491.1|FL269491
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413172|gb|FL269495.1|FL269495
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413177|gb|FL269500.1|FL269500
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211410631|gb|FL269489.1|FL269489
EST:     AGCTCGCTGCAKNSAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGC-GACG-ATTTTGCACTCTGACATTCAATCGAAGGCAGACAA
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGA-GCATTTTGCACTCTGACATTCAATCGAAGGCAGACAA
EST: gi|91878967|gb|EB408924.1|EB408924
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413180|gb|FL269503.1|FL269503
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGC-GA-SATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|89754588|gb|DY685315.1|DY685315
EST:     GCTCGCTGCAGCCAAGAAGGCCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAG
genomic: GCTCGCTGCAGCCAAGAAGGCC-GTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAG-CATTTTGCACTCTGACATTCAATCGAAGGCAGACAA
EST: gi|211413181|gb|FL269504.1|FL269504
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGASSATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415725|gb|FL269513.1|FL269513
EST:     AGCTCGCTGCAG-CAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211410632|gb|FL269490.1|FL269490
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGNA-SATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|71439240|gb|DR820290.1|DR820290
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|76937581|gb|DV175190.1|DV175190
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|101401653|gb|EB822491.1|EB822491
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415718|gb|FL269506.1|FL269506
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGC-GA-SATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415720|gb|FL269508.1|FL269508
EST:     AGCTCGCTGCA-KNAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGNASSATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211415728|gb|FL269516.1|FL269516
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
EST: gi|211413175|gb|FL269498.1|FL269498
EST:     AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAG                         AGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG
genomic: AGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 105

CGCCACCATGTCGCAGGCTACGGAGGTCGTCGGAAACCCGTACGCCGCCGAGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 52

CGCCACCATGTCGCAGGCTACGGAGGTCGTCGGAAACCCGTACGCCGCCGAGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 69

CGCCACCATGTCGCAGGCTACGGAGGTCGTCGGAAACCCGTACGCCGCCGAGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 55

CGCCACCATGTCGCAGGCTACGGAGGTCGTCGGAAACCCGTACGCCGCCGAGCTCGCTGCAGCCAAGAAGGCCGTCGCCCTAGCGGCCCGCCTCTGCCAGgttacgtggt ... gtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccgttgtatttacttgtttcctcttcccctatgtttcccaatgtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG
                   tttcctcttcccctat  CT-rich tract
      ttgtattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcattgctctagtttctgtattttcttggacttgatgatcccaatttcccgttgtatttacttgtttcctcttcccctatgtttcccaatgtttcttcagAGAGTGCAGCGGAGCATTTTGCACTCTGACATTCAATCGAAGGCAGACAAGACTCCTGTTACAGTTGCGGATTATG

- - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - tgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttc