1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcatctctcttgtttatcttaccaagaagaaagttggattgctatctttcttgttcattgcgcgctaatgtcttccatcaactacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGCGTTGTGTTTGGTGGCCTCGTCACGTCTCCCCTCTACGTTTATCCGTCAA
species | Zea mays |
transcript | GRMZM2G088964_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAAT GCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGCEST: gi|149107073|gb|EE188964.2|EE188964
genomic: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAATgtgcatctct ... ctacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGC
EST: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAAT GCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGCEST: gi|148932266|gb|EC875808.2|EC875808
genomic: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAATgtgcatctct ... ctacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGC
EST: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAAT GCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGC
genomic: GGCACCATGAGGGGCAGTACACAATACACACAGTCTAACAAGTGCAAAATgtgcatctct ... ctacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGC
gattgctatctttcttgttcattgcgcgctaatgtcttccatcaactacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGCGTTGTGTTTGGTGGCCTCGTCACGTCTCCCCTCTACGTTTATCCGTCAA
cgctaat putative branch site (score: 26)
tatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatctctcttgtttatcttaccaagaagaaagttggattgctatctttcttgttcattgcgcgctaatgtcttccatcaactacgagcagGCTGGCAACGACCTTCGCAAAGATCTAGCCCTTGCTTACAAGACCCTCGGCGTTGTGTTTGGTGGCCTCGTCACGTCTCCCCTCTACGTTTATCCGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG