Sequence
atgc intronic sequence ATGC exonic sequencegtatatttgaataatttattactgctgttttctgtcaattagctcgtttcaccccccacccccatacaaattctgacgtatttcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCAGCGTATAAAGACCCATAACACACATGGAACCGGTTGCACATTAGCATCATGTATTGCTGCTGAATTAGCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G088664_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g09000.1 (Oryza sativa), 3'ss of exon 6
gtatat-ttgaataatttattac--tgctgttttctgtca-attagctcgtttcaccccccac--ccccatacaaattctgacgtattt-catcagGTAAGGAGTTCACTGAGCTTCGTGGTCAGCGTATAAAGACCCATAACACACATGGAACCGGTTGCACATTAGCATCATGTATTGCTGCTGAATTAGCAAA
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gtacaaattccataattcaatacaatactgtccattatcacatctacatcctgcccttttagcggcctcatataaattctgaactgttttcatcagGTAAGGAGTTCATTGAGCTCCATGCGCATCGCATAAAGACCCATAACACACATGGAACTGGTTGCACTTTAGCTTCATGTATAGCTTCCGAATTAGCGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaattagctcgtttcaccccccacccccatacaaattctgacgtatttcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCAGCGTATAAAGACCCATAACACACATGGAACCGGTTGCACATTAGCATCATGTATTGCTGCTGAATTAGCAAA
ttctgac putative branch site (score: 2)
tttcatc putative PPT
atacaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatttgaataatttattactgctgttttctgtcaattagctcgtttcaccccccacccccatacaaattctgacgtatttcatcagGTAAGGAGTTCACTGAGCTTCGTGGTCAGCGTATAAAGACCCATAACACACATGGAACCGGTTGCACATTAGCATCATGTATTGCTGCTGAATTAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT