Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5455863|gb|AI833553.1|AI833553EST: TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST:
gi|12971305|gb|BG267416.1|BG267416EST: TCAAATCCATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST:
gi|37388193|gb|CF631303.1|CF631303EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST:
gi|86471498|gb|DY237868.1|DY237868EST: AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTATTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: AATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST:
gi|78091524|gb|DV519898.1|DV519898EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
EST:
gi|22542666|gb|BU093104.1|BU093104EST: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAG AAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
genomic: TCAAATACATTGACTTCTACAGCAGAGATATGGACCTCATTTTCGGACAGgtaatacgtt ... cattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGAGAGCTGAATAAACCTTGGAGGACATCATAAGTCATTTTGGCTATGTTC
aaacaaaattgtat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatacgttgtctatcatttttcccataatggatatgatgtatctgcaaaagttgaaacaaaattgtatgcattttgtagAAGCAAATGCATTACTTCCGCAGGAGGACAGCGAAGGAAATACTGAGTTTGAGAGCTGAATAAACCTTGGAGGACATCATAAGTCATTTTGGCTATGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA