Sequence
atgc intronic sequence ATGC exonic sequence...ccccgtggtgctgtttgagcacgtcctcttgtacaacctgaaggagaaaatccccgacgaggagtacatctgctgcctggaggaggcggagatggtgcggCCAGGTGAGCACGTGACCATCCTCACGTACTCCCGCATGAGGTACCACGTGATGCAGGCTGCCAAGACGCTGGTGAACAAGGGGTACGACCCCGAGGTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G088565_T03 (Zea mays), 3'ss of exon 1
lower sequence: AT2G34590.1 (Arabidopsis thaliana), 3'ss of exon 4
ccccgtggtgctgtttgagcacgtcctcttgtacaacctgaaggagaaaatccccgacgaggagtacatctgctgcctggaggaggcggagatggtgcggCCAGGTGAGCACGTGACCATCCTCACGTACTCCCGCATGAGGTACCACGTGATGCAGGCTGCCAAGACGCTGGTGAACAAGGGGTACGACCCCGAGGTCA-----------------------------------------
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------------------------------------------------------------gtactaaatc-acaaccaaaagctcttcttcat--tgaaattgaaacaacacagaacta--atagagtactt--gtatcagGTACCATGTAATGCAGGCTGCAAAGACGCTGGTGAACAAAGGGTATGATCCAGAGGTTATCGACATAAGGTCGTTGAAGCCGTTTGATCTCTACACAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60345736|gb|DN212709.1|DN212709EST: GGCATGAACATGGGTTTCCTTCTCCTTGCCTACAACCAGATCTCGAACAA CCAGGTGAGCACGTGACCATCCTCACGTACTCCCGCATGAGGTACCACGTG
genomic: GGCATGAACATGGGTTTCCTTCTCCTTGCCTACAACCAGATCTCGAACAActgcggcatg ... gatggtgcggCCAGGTGAGCACGTGACCATCCTCACGTACTCCCGCATGAGGTACCACGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccccgtggtgctgtttgagcacgtcctcttgtacaacctgaaggagaaaatccccgacgaggagtacatctgctgcctggaggaggcggagatggtgcggCCAGGTGAGCACGTGACCATCCTCACGTACTCCCGCATGAGGTACCACGTGATGCAGGCTGCCAAGACGCTGGTGAACAAGGGGTACGACCCCGAGGTCA
- - - ggtgctg
- - - - - - - - - - - - - - - - - -acctgaa
- - - - - - - - - - - - - - - - - - - - - ggagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgctg