1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caatgatttggatcaattcattcatgcccctaatttctttgatgcttaggtccatcatatcacatgattctggtgcctattccttttgtttattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCATTGCTGATCACATGTACCGAATGGCCTTGATGGCTCTGATTGCTGGTG
species | Zea mays |
transcript | GRMZM2G088397_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCEST: gi|211066808|gb|FL430471.1|FL430471
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCEST: gi|29130677|gb|CB381381.1|CB381381
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCEST: gi|211431318|gb|FL387550.1|FL387550
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCEST: gi|211108462|gb|FL406879.1|FL406879
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCEST: gi|211471794|gb|FL411618.1|FL411618
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
EST: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAG ACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
genomic: CGTCGGCCGCCTCGGCCATCGATTTCCTCACCCTGTGTCACCGCCTCAAGgtacaagata ... tattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCC
ttaggtccatcatatcacatgattctggtgcctattccttttgtttattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCATTGCTGATCACATGTACCGAATGGCCTTGATGGCTCTGATTGCTGGTG
cctattccttttgttt CT-rich tract
ttttgtttattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgatttggatcaattcattcatgcccctaatttctttgatgcttaggtccatcatatcacatgattctggtgcctattccttttgtttattctttagACCACCAAAAGGAAAGGATGGATAAACCATAGCATCAAGGGCCCTGAGTCCATTGCTGATCACATGTACCGAATGGCCTTGATGGCTCTGATTGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -tgatttg
- - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - -gtccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgatt