Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttttttttcgatttagaattctttcttcatcgattttgccctatgtgctagatcctcaaatcaattccgcatcttgtttccgcccttgattgatgcattcgctcgtctgacttgattgatgcgctcgatctgggggactcttcgttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG

Basic information

species Zea mays
transcript GRMZM2G088212_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088212_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os06g51150.1 (Oryza sativa), 3'ss of exon 1
gtgcttttttttcgatttagaattctttcttcatcgattttgccctatgtgctagatcctcaaatcaattccgcatcttgtttccgcccttgattgatgcattcgctcgtct-gacttgattgatgcgctcgatctgggggactcttcgttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG
                                  ||  ||| ||  || | ||        | ||| ||     || | ||||      ||| ||  |  || ||||| ||   |  ||| |||  | ||         ||| || || | ||||||||| || ||||| || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
------------------------------gtgccgccttttcctgattttcttttcttctagatcgatcgtcgatttggtttgg---tttggtttcttgatgcgctcatcccaatctgactgactcact---------ggattcctcctccttgcagCATCGGCCGTCCAGCGGGAGCAATTCCACCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCCGCCCTCACCGTCGGAGAGCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028432|gb|CO457181.1|CO457181
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021126|gb|FK987898.1|FK987898
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|474220|gb|T18397.1|T18397
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372732|gb|FK987869.1|FK987869
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375391|gb|FK987876.1|FK987876
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|8368640|gb|BE051585.1|BE051585
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375398|gb|FK987883.1|FK987883
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211026003|gb|FK987922.1|FK987922
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375395|gb|FK987880.1|FK987880
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372737|gb|FK987874.1|FK987874
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372728|gb|FK987865.1|FK987865
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021125|gb|FK987897.1|FK987897
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|33771001|gb|CF273295.1|CF273295
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|32862678|gb|CF002360.1|CF002360
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372729|gb|FK987866.1|FK987866
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211023550|gb|FK987907.1|FK987907
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|6536530|gb|AW224843.1|AW224843
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372724|gb|FK987861.1|FK987861
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|8367742|gb|BE050687.1|BE050687
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|38229587|gb|CF919900.1|CF919900
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375401|gb|FK987886.1|FK987886
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|37622130|gb|CF675183.1|CF675183
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375399|gb|FK987884.1|FK987884
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021123|gb|FK987895.1|FK987895
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211023560|gb|FK987917.1|FK987917
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|38229627|gb|CF919940.1|CF919940
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|37361299|gb|CF602588.1|CF602588
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375402|gb|FK987887.1|FK987887
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|71442812|gb|DR823862.1|DR823862
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211023552|gb|FK987909.1|FK987909
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGA-CACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211372730|gb|FK987867.1|FK987867
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021118|gb|FK987890.1|FK987890
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021124|gb|FK987896.1|FK987896
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|31353478|gb|CD437835.1|CD437835
EST:     CGGCCCGCCCGCTCGACGTGCTCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021127|gb|FK987899.1|FK987899
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211375403|gb|FK987888.1|FK987888
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|28188176|gb|CB179786.1|CB179786
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|33285619|gb|CF075414.1|CF075414
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021121|gb|FK987893.1|FK987893
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211023556|gb|FK987913.1|FK987913
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|6626360|gb|AW257892.1|AW257892
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211023548|gb|FK987905.1|FK987905
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|33770680|gb|CF272974.1|CF272974
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211021122|gb|FK987894.1|FK987894
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGA-CACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|211370082|gb|FK987859.1|FK987859
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|20811112|gb|BQ295590.1|BQ295590
EST:     GGCCCGCCCGCTCGACG-GCATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: GGCCCGCCCGCTCGACGTG-ATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
EST: gi|71442811|gb|DR823861.1|DR823861
EST:     CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAG                         CACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC
genomic: CGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 655

GCCTTCTCCTTCTCCCCCCTAGTCTAGAGGCGTTTGCTCCCCAATCCCTTCGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1143

GCCTTCTCCTTCTCCCCCCTAGTCTAGAGGCGTTTGCTCCCCAATCCCTTCGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 781

GCCTTCTCCTTCTCCCCCCTAGTCTAGAGGCGTTTGCTCCCCAATCCCTTCGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1166

GCCTTCTCCTTCTCCCCCCTAGTCTAGAGGCGTTTGCTCCCCAATCCCTTCGGCCCGCCCGCTCGACGTGATCCCACCGGCAGCCATGGATCCATACAAGgtgctttttt ... gttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgctcgtctgacttgattgatgcgctcgatctgggggactcttcgttcttgcagCACCGCCCGTCTAGTGGGAGCAACTCCAGCTTCTGGACCACCAACTCCGGCGCCCCCGTCTGGAACAACAACTCTGCCCTCACCGTCGGACAGCGAG
                                       ctcttcgttcttgc  CT-rich tract