1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttattactggcctattaccaaggccattcactaatatcaatcttcccgagacagttacactgtcttctgtaaaataatcataattttcccttttgccagGTGACAACTACAATCACAGTTCACGAGCTAGCCACACCAGGCCTGAAGGCATTTTTATGCATTCCTTTCCCGTACAAGAAATCTGCAAAG
species | Zea mays |
transcript | GRMZM2G088132_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cccgagacagttacactgtcttctgtaaaataatcataattttcccttttgccagGTGACAACTACAATCACAGTTCACGAGCTAGCCACACCAGGCCTGAAGGCATTTTTATGCATTCCTTTCCCGTACAAGAAATCTGCAAAG
ttttcccttttgcc CT-rich tract
ttctgtaaaataatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattactggcctattaccaaggccattcactaatatcaatcttcccgagacagttacactgtcttctgtaaaataatcataattttcccttttgccagGTGACAACTACAATCACAGTTCACGAGCTAGCCACACCAGGCCTGAAGGCATTTTTATGCATTCCTTTCCCGTACAAGAAATCTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - -tactggc
- - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa