1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgcttcctcatgcaacaagcaaccgtaactattccccagatggtcaggtgatcagttttctccctgtttaatgttgcaagggaatctcacatttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAG
species | Zea mays |
transcript | GRMZM2G088060_T03 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGCAACCCCGGAACAGAGCGAGGCGACGCRG-GGCACCTCATCTCCG TTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGAEST: gi|211333603|gb|FL352919.1|FL352919
genomic: ACTGCAACCCCGGAACAGAGCGAGGCGACGCCGAGGCACCTCATCTCCGgtaagtgaga ... catttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGA
EST: CACTGCAACCCCGGAACAGAGCGAGGCGACGCRG-GGCACCTCATCTCCG TTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGA
genomic: CACTGCAACCCCGGAACAGAGCGAGGCGACGCCGAGGCACCTCATCTCCGgtaagtgaga ... catttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGA
caggtgatcagttttctccctgtttaatgttgcaagggaatctcacatttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAG
atctcac putative branch site (score: 175)
tttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcttcctcatgcaacaagcaaccgtaactattccccagatggtcaggtgatcagttttctccctgtttaatgttgcaagggaatctcacatttgccagTTGATATTTTCGACTATTTAGGCGAAGGGAAATGGCGACCGTTCCAGGGGATCTGATCTGGCAGATTGTGAGGAAGAACAACTCCTTCCTGGTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-tgcttcc
- - - - tcatgca
- - - - - - - - caagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca