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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgagatcccttctcttgtggcattcgacgatgttttgttgggtccagtatcttgctgtcggctgtattttttgtggtaaagttagggcggttcaagctgatgctgattagcgttcaaatcccagTGCTCAGTACTTCACTAGTCGATGCGTTTGAATGATTCGACTGGTGATTTGCGGGGCGTACTCCGCATGATTCGTCGTTGGTTAG

Basic information

species Zea mays
transcript GRMZM2G088060_T02
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78116677|gb|DV535064.1|DV535064
EST:     CCGGAACAGAGCGAGGCGACGCCGAGGCACCTCATCTCCG                         TGCTCAGTACTTCACTAGTCGATGCGTTTGAATGATTCGACTGGTGATTTG
genomic: CCGGAACAGAGCGAGGCGACGCCGAGGCACCTCATCTCCGgtaagtgaga ... caaatcccagTGCTCAGTACTTCACTAGTCGATGCGTTTGAATGATTCGACTGGTGATTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtggtaaagttagggcggttcaagctgatgctgattagcgttcaaatcccagTGCTCAGTACTTCACTAGTCGATGCGTTTGAATGATTCGACTGGTGATTTGCGGGGCGTACTCCGCATGATTCGTCGTTGGTTAG
                               tgctgat  putative branch site (score: 3)
       taaagtta  TA-rich tract