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...ttccgttgttcggtgagttctcaaaactcttgacgctatgtatctgtatctgtgttgattaacatttgcagtatgtttttttcttggctcataggaatagGATAATTGAAACAGCTCATCTCATGAGGGATATGTATTACAAAAGGAACCCACCAGCAAGAGGTTCAAGCTCTAATATTTCAGTAAAAAGTTACTTTGAG
species | Zea mays |
transcript | GRMZM2G087105_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211136034|gb|FL319344.1|FL319344
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211303809|gb|FL321304.1|FL321304
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|76021370|gb|DT948540.1|DT948540
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|74238280|gb|DT646194.1|DT646194
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|50337804|gb|CO532930.1|CO532930
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|6021302|gb|AW066230.1|AW066230
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: GGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211108624|gb|FL325821.1|FL325821
genomic: GGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211528602|gb|FL330639.1|FL330639
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211399613|gb|FL346426.1|FL346426
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211091699|gb|FL353091.1|FL353091
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|37422877|gb|CF649154.1|CF649154
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211004064|gb|FL319215.1|FL319215
genomic: CCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211267657|gb|FL340177.1|FL340177
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211231251|gb|FL350932.1|FL350932
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211475490|gb|FL344064.1|FL344064
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|71441001|gb|DR822051.1|DR822051
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211510662|gb|FL361516.1|FL361516
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211350211|gb|FL361418.1|FL361418
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|148986029|gb|EE029876.2|EE029876
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATG GATAATTGAAACAGCTCATCTCATGAGGGATATGTATTACAAAAGGAACCCEST: gi|148991227|gb|EE032692.2|EE032692
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGgtcactttct ... ataggaatagGATAATTGAAACAGCTCATCTCATGAGGGATATGTATTACAAAAGGAACCC
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|211322614|gb|FL345962.1|FL345962
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAGEST: gi|78085484|gb|DV513877.1|DV513877
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
EST: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTCATGGAATAG
genomic: CTGGACGACCACTTCGACCTCGCCCGCTGCTCCGCCGTCTGCGGCTC-----AT-Ggtcactttct ... atagg
gtatctgtgttgattaacatttgcagtatgtttttttcttggctcataggaatagGATAATTGAAACAGCTCATCTCATGAGGGATATGTATTACAAAAGGAACCCACCAGCAAGAGGTTCAAGCTCTAATATTTCAGTAAAAAGTTACTTTGAG
gattaac putative branch site (score: 16)
tatgtttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccgttgttcggtgagttctcaaaactcttgacgctatgtatctgtatctgtgttgattaacatttgcagtatgtttttttcttggctcataggaatagGATAATTGAAACAGCTCATCTCATGAGGGATATGTATTACAAAAGGAACCCACCAGCAAGAGGTTCAAGCTCTAATATTTCAGTAAAAAGTTACTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttgc