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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctgagtctactgcatcaaaatctcattaaaacttaacaccatgactaattttgttggtaatattatggttatggatcgtttttccatttatgttttaacatgtaatcttgtttgttgcagGTCTTTACTTTGACTGCAACTCTAGAATTTGGTATTCATATGATCAACAGACTCAACAGTATGTCCCTTGTAAATGGTAGGATCAGAGTGCTTCTGCTAT

Basic information

species Zea mays
transcript GRMZM2G087048_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087048_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 3'ss of exon 14
-------------------------------gtaagtctgagtctact--gcatcaaaatctcattaaaacttaacaccatgactaattttgttggtaatattatggttatggatcgtttttccattta-tgttttaacatgtaatcttgt--ttgttg-cagGTCTTTACTTTGACTGCAACTCTAGAATTTGGTATTCATATGATCAACAGACTCAACAGTATGTCCCTTGTAAATGGTAGGATCAGAGTGCTTCTGCTAT
                                | | |       ||||   |||   | |    ||  || |     |||    |  |||| ||   || |  ||| ||       ||   |   |  | | ||  |   | ||| |||||  |||||  |||| ||||||| |||  | ||  || || | |||||||||||||||||||| ||||||||||||||||||||||      || |    |||    | |||  
gtatgtatattgccacaattttcttactatgatcaattcagaaatactttccatgtgacttgtttttgaaatgttttccaattttccttttttttaaaaaaaaatgtttgctccatgtcaattgttaaagtattacagtttataaccttgtatttgttttcagGACTTTACTATGATGGTAATGCTGGAGTGTGGTATTCATATGATCAACAAACTCAACAGTATGTCCCTTGTAGTGAACAGAACAGCAGTAAAGCAGCTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttatggatcgtttttccatttatgttttaacatgtaatcttgtttgttgcagGTCTTTACTTTGACTGCAACTCTAGAATTTGGTATTCATATGATCAACAGACTCAACAGTATGTCCCTTGTAAATGGTAGGATCAGAGTGCTTCTGCTAT
                           ttttaac  putative branch site (score: 2)
                                        tcttgttt  putative PPT
                    atttatgttttaacat  TA-rich tract