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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttcacactgcacattgttgatattagtttgttataaattatagtggtttataattaagtaaagtagtaagtaagtgtatgtgcaatgttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCCGACTGCACTTACTATCTCAG

Basic information

species Zea mays
transcript GRMZM2G087032_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G087032_T04 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g68860.3 (Oryza sativa), 3'ss of exon 1
aatttcacactgc-acattgttgatattagtttgttataaattatagtggtttataattaagtaaagtagtaagtaagtgtatgtgcaatgttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCCGACTGCACTTACTATCTCAG
  ||| | |  |  || || ||||           | | |  |   ||| ||  |  |   | |   | ||        || |||||||||||| |||||||||| |||||||| || ||| |||||  | || ||| | |||||||||||||  |||||||||||||  | || ||||| |||||||||||||| |||||
-gttttatagcgtgaccttattgacgccgaacaactttcatcttgtgtgcttgttggtcttggatttttgtttcatgtggtgtgtgcaatgttggttgcagAGGGTATGTGGCAGCAGATGACCATGAGCGGCAGTGGCGCTATGCAACCTGGACCATATCCTGAGCGGTCCGGAGAACCGGACTGCACTTACTACCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31357454|gb|CD441811.1|CD441811
EST:     CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAG                         AGGGGATGTGGCAACAGATGGCCATGGACAGCGGTGCCACTATGCAACCTG
genomic: CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAGgttagggatt ... ttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTG
EST: gi|211213427|gb|FL335733.1|FL335733
EST:     CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAG                         AGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTG
genomic: CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAGgttagggatt ... ttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTG
EST: gi|211485765|gb|FL084118.1|FL084118
EST:     CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAG                         AGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTG
genomic: CACTGCTGCCGTCGACAGGTCCTCCCCCGACCCCGACGCGCTCTATGAAGgttagggatt ... ttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttataattaagtaaagtagtaagtaagtgtatgtgcaatgttgattgcagAGGGGATGTGGCAACAAATGGCCATGGACAGCGGTGCCACTATGCAACCTGGGTCATATCCTGAGCGACCAGGTGAACCCGACTGCACTTACTATCTCAG
                                           tgttgat  putative branch site (score: 4)
     ttataattaagtaaag  TA-rich tract